Z. japonica Nagirizaki
Zjn_sc00019.1.g01960.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G19580.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 422 202 419 4e-33 64.7 23.5 33.2
Subject 273 1 257
Annot | Symbols: AZF2, ZF2 | zinc-finger protein 2 | chr3:6803293-6804114 REVERSE LENGTH=273
NR ref|XP_003562286.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 422 202 422 2e-46 52.4 28.9 35.3
Subject 221 1 221
Annot PREDICTED: zinc finger protein 1-like [Brachypodium distachyon]
IRGSP Os12t0583700-00_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 422 229 422 1e-43 58.5 27.7 32.2
Subject 247 36 247
Annot
Sbicolor Sobic.008G144500.1.p|Chr08|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 422 252 420 5e-36 68.7 21.1 26.1
Subject 290 101 287
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00019.1.g01960.1.am.mk length: 422 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 280-300
349-369
ProfileScan PS50157 ZINC_FINGER_C2H2_2 9.349 278-305
347-369
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 0.12 278-300
347-369
no_ID  
HMMPanther PTHR26374 FAMILY 1.5e-24 247-369
HMMPanther PTHR26374:SF121SUBFAMILY NOT 1.5e-24 247-369
HMMPfam PF13912 zf-C2H2_6 3.1e-11 278-302
346-371
Seg seg seg NA 24-45
304-317
325-343
superfamily SSF57667 C2H2 5.2e-09 276-369
Pseudomolecule
Chromosome Start End Strand
263954426397250+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00019.1 maker_non_over exon 1977073 1977878 . - . ID=Zjn_sc00019.1.g01960.1.am.mk:exon:3
Zjn_sc00019.1 maker_non_over exon 1978180 1978754 . - . ID=Zjn_sc00019.1.g01960.1.am.mk:exon:2
Zjn_sc00019.1 maker_non_over exon 1978871 1978881 . - . ID=Zjn_sc00019.1.g01960.1.am.mk:exon:1

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