Z. japonica Nagirizaki
Zjn_sc00019.1.g01780.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G19790.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 413 52 110 5e-27 61.3 12.6 13.8
Subject 253 19 77
Annot | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253
NR ref|XP_008666751.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 413 1 412 e-100 101.2 60.5 68.5
Subject 418 1 417
Annot PREDICTED: uncharacterized protein LOC103645487 [Zea mays] gi|414871902|tpg|DAA50459.1| TPA: putative AP2/EREBP transcription factor superfamily protein [Zea mays] gi|645167067|gb|AIB05195.1| AP2-EREBP transcription factor, partial [Zea mays]
IRGSP Os12t0582900-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 413 47 413 1e-58 96.1 40.7 48.7
Subject 397 58 394
Annot
Sbicolor Sobic.001G169400.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 413 1 413 1e-77 109 57.6 67.1
Subject 450 1 450
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00019.1.g01780.1.sm.mk length: 413 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 6.1e-08 55-66
77-93
Gene3D G3DSA:3.30.730.10 no description 2.2e-26 54-110
HMMPfam PF00847 AP2 2e-16 54-103
HMMSmart SM00380 DNA-binding 2.3e-35 54-117
ProfileScan PS51032 AP2_ERF 19.599 54-111
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 5.3e-21 53-114
no_ID  
HMMPanther PTHR31194 SHN 1.9e-23 49-138
HMMPanther PTHR31194:SF0 SHN 1.9e-23 49-138
Seg seg seg NA 21-37
39-56
87-98
115-124
169-180
220-236
319-334
350-396
398-411
Pseudomolecule
Chromosome Start End Strand
265458886547129-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00019.1 maker_non_over exon 1827194 1828435 . + . ID=Zjn_sc00019.1.g01780.1.sm.mk:exon:1

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