Z. japonica Nagirizaki
Zjn_sc00018.1.g07600.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT3G25570.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
394 |
14 |
358 |
2e-98 |
88.6 |
48.7 |
61.2 |
| Subject |
349 |
3 |
346 |
|
| Annot |
| Symbols: | Adenosylmethionine decarboxylase family protein | chr3:9287413-9288462 REVERSE LENGTH=349 |
| NR |
ref|XP_012698749.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
394 |
1 |
393 |
0.0 |
100 |
88.1 |
92.1 |
| Subject |
394 |
1 |
393 |
|
| Annot |
PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Setaria italica] |
| IRGSP |
Os09t0424300-03_chr09_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
394 |
1 |
382 |
0.0 |
99.5 |
83.2 |
88.6 |
| Subject |
392 |
1 |
380 |
|
| Annot |
|
| Sbicolor |
Sobic.002G206700.1.p|Chr02|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
394 |
1 |
379 |
0.0 |
100.3 |
84.8 |
88.6 |
| Subject |
395 |
1 |
379 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00018.1.g07600.1.sm.mk |
length: 394 aa. |
| IPR001985 |
S-adenosylmethionine decarboxylase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004014 |
adenosylmethionine decarboxylase activity |
|
|
| Biological Process |
GO:0006597 |
spermine biosynthetic process |
|
|
| Biological Process |
GO:0008295 |
spermidine biosynthetic process |
|
|
| HMMPanther |
PTHR11570 |
S-ADENOSYLMETHIONINE |
3.8e-148 |
1-364 |
| HMMPfam |
PF01536 |
SAM_decarbox |
2.2e-120 |
15-345 |
| IPR016067 |
S-adenosylmethionine decarboxylase, core |
| Molecular Function |
GO:0004014 |
adenosylmethionine decarboxylase activity |
|
|
| Biological Process |
GO:0008295 |
spermidine biosynthetic process |
|
|
| Gene3D |
G3DSA:3.60.90.10 |
no description |
1.4e-103 |
15-345 |
| superfamily |
SSF56276 |
S-adenosylmethionine |
3.2e-123 |
22-347 |
| IPR018166 |
S-adenosylmethionine decarboxylase, conserved site |
| Molecular Function |
GO:0004014 |
adenosylmethionine decarboxylase activity |
|
|
| PatternScan |
PS01336 |
ADOMETDC |
NA |
74-84 |
| IPR018167 |
S-adenosylmethionine decarboxylase subgroup |
| Molecular Function |
GO:0004014 |
adenosylmethionine decarboxylase activity |
|
|
| HMMPIR |
PIRSF001355 |
S-adenosylmethionine |
1.7e-150 |
1-354 |
| HMMTigr |
TIGR00535 |
SAM_DCase: |
2.9e-128 |
19-346 |
| no_ID |
|
| HMMPanther |
PTHR11570:SF0 |
SUBFAMILY |
3.8e-148 |
1-364 |
| Seg |
seg |
seg |
NA |
5-16 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 20 | 9290328 | 9291512 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00018.1 |
maker_non_over |
exon |
3605633 |
3606817 |
. |
- |
. |
ID=Zjn_sc00018.1.g07600.1.sm.mk:exon:1 |