Z. japonica Nagirizaki
Zjn_sc00018.1.g07490.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G17420.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1027 1 1027 0.0 99.9 81.4 88.9
Subject 1026 1 1026
Annot | Symbols: IRX3, CESA7, ATCESA7, MUR10 | Cellulose synthase family protein | chr5:5736859-5741407 REVERSE LENGTH=1026
NR ref|XP_004956855.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1027 1 1027 0.0 102.2 96.5 97.8
Subject 1050 1 1050
Annot PREDICTED: cellulose synthase A catalytic subunit 9 [UDP-forming] [Setaria italica]
IRGSP Os09t0422500-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1027 1 1027 0.0 102.7 94.2 96.7
Subject 1055 1 1055
Annot
Sbicolor Sobic.002G205500.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1027 1 1027 0.0 102.1 95.8 97.6
Subject 1049 1 1049
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00018.1.g07490.1.sm.mk length: 1027 aa.
IPR005150 Cellulose synthase
method AccNumber shortName E-value location
Cellular Component GO:0016020 membrane    
Molecular Function GO:0016760 cellulose synthase (UDP-forming) activity    
Biological Process GO:0030244 cellulose biosynthetic process    
HMMPfam PF03552 Cellulose_synt 0 320-1021
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 9.8e-13 22-66
IPR027934 Cellulose synthase, RING-type zinc finger
HMMPfam PF14569 zf-UDP 1.5e-18 26-66
no_ID  
Coil coil coiled-coil NA 418-439
HMMPanther PTHR13301 X-BOX 0 16-1027
HMMPanther PTHR13301:SF21 CELLULOSE 0 16-1027
Seg seg seg NA 72-86
243-256
834-851
923-938
superfamily SSF53448 Nucleotide-diphospho-sugar 7.8e-11 319-849
superfamily SSF57850 RING/U-box 3.5e-22 19-90
Pseudomolecule
Chromosome Start End Strand
2093436679347890-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00018.1 maker_non_over exon 3549255 3549453 . + . ID=Zjn_sc00018.1.g07490.1.sm.mk:exon:1
Zjn_sc00018.1 maker_non_over exon 3549618 3549853 . + . ID=Zjn_sc00018.1.g07490.1.sm.mk:exon:2
Zjn_sc00018.1 maker_non_over exon 3549939 3550035 . + . ID=Zjn_sc00018.1.g07490.1.sm.mk:exon:3
Zjn_sc00018.1 maker_non_over exon 3550130 3550250 . + . ID=Zjn_sc00018.1.g07490.1.sm.mk:exon:4
Zjn_sc00018.1 maker_non_over exon 3550352 3550618 . + . ID=Zjn_sc00018.1.g07490.1.sm.mk:exon:5
Zjn_sc00018.1 maker_non_over exon 3550727 3551072 . + . ID=Zjn_sc00018.1.g07490.1.sm.mk:exon:6
Zjn_sc00018.1 maker_non_over exon 3551164 3551427 . + . ID=Zjn_sc00018.1.g07490.1.sm.mk:exon:7
Zjn_sc00018.1 maker_non_over exon 3551524 3551736 . + . ID=Zjn_sc00018.1.g07490.1.sm.mk:exon:8
Zjn_sc00018.1 maker_non_over exon 3551831 3552032 . + . ID=Zjn_sc00018.1.g07490.1.sm.mk:exon:9
Zjn_sc00018.1 maker_non_over exon 3552145 3552341 . + . ID=Zjn_sc00018.1.g07490.1.sm.mk:exon:10
Zjn_sc00018.1 maker_non_over exon 3552432 3552785 . + . ID=Zjn_sc00018.1.g07490.1.sm.mk:exon:11
Zjn_sc00018.1 maker_non_over exon 3552891 3553478 . + . ID=Zjn_sc00018.1.g07490.1.sm.mk:exon:12

Top