Z. japonica Nagirizaki
Zjn_sc00018.1.g06770.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
No_hits |
| NR |
ref|XP_004956768.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
321 |
1 |
321 |
e-112 |
124 |
71.7 |
78.8 |
| Subject |
398 |
99 |
398 |
|
| Annot |
PREDICTED: protein TIFY 6A-like [Setaria italica] |
| IRGSP |
Os09t0401300-01_chr09_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
321 |
2 |
321 |
e-102 |
129.6 |
68.5 |
74.5 |
| Subject |
416 |
116 |
416 |
|
| Annot |
|
| Sbicolor |
Sobic.002G196200.1.p|Chr02|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
321 |
1 |
321 |
e-115 |
127.1 |
72 |
80.7 |
| Subject |
408 |
108 |
408 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00018.1.g06770.1.sm.mkhc |
length: 321 aa. |
| IPR010399 |
Tify |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF06200 |
tify |
9.5e-16 |
75-110 |
| HMMSmart |
SM00979 |
no description |
8.5e-13 |
75-110 |
| ProfileScan |
PS51320 |
TIFY |
16.001 |
75-110 |
| IPR018467 |
CO/COL/TOC1, conserved site |
| HMMPfam |
PF09425 |
CCT_2 |
1.3e-13 |
239-263 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
223-232 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 20 | 9745274 | 9747258 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00018.1 |
maker |
exon |
3149887 |
3150481 |
. |
- |
. |
ID=Zjn_sc00018.1.g06770.1.sm.mkhc:exon:5 |
| Zjn_sc00018.1 |
maker |
exon |
3150651 |
3150708 |
. |
- |
. |
ID=Zjn_sc00018.1.g06770.1.sm.mkhc:exon:4 |
| Zjn_sc00018.1 |
maker |
exon |
3150816 |
3151224 |
. |
- |
. |
ID=Zjn_sc00018.1.g06770.1.sm.mkhc:exon:3 |
| Zjn_sc00018.1 |
maker |
exon |
3151328 |
3151412 |
. |
- |
. |
ID=Zjn_sc00018.1.g06770.1.sm.mkhc:exon:2 |
| Zjn_sc00018.1 |
maker |
exon |
3151513 |
3151871 |
. |
- |
. |
ID=Zjn_sc00018.1.g06770.1.sm.mkhc:exon:1 |