Z. japonica Nagirizaki
Zjn_sc00018.1.g06090.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 No_hits
NR ref|XP_004956691.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 189 15 160 6e-64 195.8 63 68.8
Subject 370 1 146
Annot PREDICTED: putative F-box protein At2g02030 [Setaria italica] gi|835922313|ref|XP_012698815.1| PREDICTED: putative F-box protein At2g02030 [Setaria italica]
IRGSP Os09t0372900-02_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 189 12 160 1e-59 200.5 56.6 64.6
Subject 379 6 155
Annot
Sbicolor Sobic.002G186400.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 189 15 160 2e-66 195.2 63.5 68.8
Subject 369 1 145
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00018.1.g06090.1.sm.mk length: 189 aa.
IPR001810 F-box domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00646 F-box 7.4e-08 31-68
HMMSmart SM00256 A 0.0019 30-70
superfamily SSF81383 F-box 1.7e-09 17-73
no_ID  
Gene3D G3DSA:1.20.1280.50 no description 8.7e-08 32-66
Seg seg seg NA 155-166
Pseudomolecule
Chromosome Start End Strand
201008014010082530+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00018.1 maker_non_over exon 2814615 2814638 . - . ID=Zjn_sc00018.1.g06090.1.sm.mk:exon:4
Zjn_sc00018.1 maker_non_over exon 2815239 2815286 . - . ID=Zjn_sc00018.1.g06090.1.sm.mk:exon:3
Zjn_sc00018.1 maker_non_over exon 2815515 2815531 . - . ID=Zjn_sc00018.1.g06090.1.sm.mk:exon:2
Zjn_sc00018.1 maker_non_over exon 2816525 2817005 . - . ID=Zjn_sc00018.1.g06090.1.sm.mk:exon:1

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