Z. japonica Nagirizaki
Zjn_sc00018.1.g05230.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G65720.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 460 3 460 0.0 98.5 70.7 83.9
Subject 453 1 453
Annot | Symbols: ATNIFS1, NIFS1, NFS1, ATNFS1 | nitrogen fixation S (NIFS)-like 1 | chr5:26296349-26297710 FORWARD LENGTH=453
NR gb|ACF83040.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 460 24 460 0.0 98 87.8 90.7
Subject 451 17 451
Annot unknown [Zea mays] gi|414885076|tpg|DAA61090.1| TPA: cysteine desulfurase [Zea mays]
IRGSP Os09t0338400-02_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 460 50 460 0.0 99.6 84.8 87.2
Subject 458 48 458
Annot
Sbicolor Sobic.002G174900.2.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 460 27 460 0.0 98.3 88.5 90.9
Subject 452 20 452
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00018.1.g05230.1.sm.mk length: 460 aa.
IPR000192 Aminotransferase, class V/Cysteine desulfurase
method AccNumber shortName E-value location
Biological Process GO:0008152 metabolic process    
HMMPfam PF00266 Aminotran_5 4.3e-88 63-424
IPR010240 Cysteine desulfurase
Biological Process GO:0006534 cysteine metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Molecular Function GO:0031071 cysteine desulfurase activity    
HAMAP MF_00331 Cys_desulf_aminotr_5 54.228 61-443
HMMTigr TIGR02006 IscS: 1.2e-195 60-460
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 3e-96 73-308
IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.90.1150.10 no description 1.4e-48 309-428
IPR015424 Pyridoxal phosphate-dependent transferase
superfamily SSF53383 PLP-dependent 9.4e-113 60-437
IPR016454 Cysteine desulfurase, NifS
HMMPIR PIRSF005572 Cysteine 1.9e-173 58-440
IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site
PatternScan PS00595 AA_TRANSFER_CLASS_5 NA 252-271
no_ID  
HMMPanther PTHR11601 CYSTEINE 2.6e-213 41-455
HMMPanther PTHR11601:SF13 SUBFAMILY 2.6e-213 41-455
Seg seg seg NA 5-14
17-44
101-115
297-306
Pseudomolecule
Chromosome Start End Strand
201050558910506971+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00018.1 maker_non_over exon 2390174 2391556 . - . ID=Zjn_sc00018.1.g05230.1.sm.mk:exon:1

Top