Z. japonica Nagirizaki
Zjn_sc00018.1.g04010.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G01940.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 180 27 180 2e-78 247.2 70.6 75.6
Subject 445 35 188
Annot | Symbols: SGR5, ATIDD15 | C2H2-like zinc finger protein | chr2:432652-434917 FORWARD LENGTH=445
NR gb|EAZ44937.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 180 1 180 5e-93 280 93.3 95.6
Subject 504 1 181
Annot hypothetical protein OsJ_29579 [Oryza sativa Japonica Group]
IRGSP Os08t0467100-02_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 180 1 180 2e-86 296.1 88.3 91.1
Subject 533 1 180
Annot
Sbicolor Sobic.002G221400.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 180 1 180 6e-94 277.2 93.9 94.4
Subject 499 1 182
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00018.1.g04010.1.sm.mk length: 180 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
HMMPfam PF00096 zf-C2H2 0.00015 65-87
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 67-87
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.635 65-87
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 6.2e-05 64-87
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 2.3e+02 65-87
107-137
143-170
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 1.9e-70 34-180
HMMPanther PTHR10593:SF17 SUBFAMILY 1.9e-70 34-180
Seg seg seg NA 27-42
superfamily SSF57667 C2H2 2.6e-07 63-164
Pseudomolecule
Chromosome Start End Strand
201114632611146978+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00018.1 maker_non_over exon 1750167 1750573 . - . ID=Zjn_sc00018.1.g04010.1.sm.mk:exon:2
Zjn_sc00018.1 maker_non_over exon 1750684 1750819 . - . ID=Zjn_sc00018.1.g04010.1.sm.mk:exon:1

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