Z. japonica Nagirizaki
Zjn_sc00018.1.g03100.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G65420.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 460 103 431 3e-61 67 30.4 42.4
Subject 308 1 300
Annot | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141592-26143750 REVERSE LENGTH=308
NR ref|XP_004957066.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 460 103 460 e-127 76.3 57.4 62.4
Subject 351 1 351
Annot PREDICTED: cyclin-D4-1 [Setaria italica]
IRGSP Os09t0466100-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 460 104 460 e-109 77.4 52.4 58.3
Subject 356 3 356
Annot
Sbicolor Sobic.002G230900.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 460 103 460 e-122 82.2 57.2 63
Subject 378 1 378
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00018.1.g03100.1.am.mk length: 460 aa.
IPR006671 Cyclin, N-terminal
method AccNumber shortName E-value location
HMMPfam PF00134 Cyclin_N 2.8e-30 160-290
PatternScan PS00292 CYCLINS NA 191-222
IPR013763 Cyclin-like
Gene3D G3DSA:1.10.472.10 no description 4.2e-31 179-291
HMMSmart SM00385 domain 4.2e-19 196-284
superfamily SSF47954 Cyclin-like 2.9e-38 155-291
IPR014400 Cyclin A/B/D/E
Biological Process GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity    
Molecular Function GO:0019901 protein kinase binding    
Biological Process GO:0051726 regulation of cell cycle    
HMMPIR PIRSF001771 Cyclin, 0.00024 1-407
no_ID  
HMMPanther PTHR10177 CYCLINE 2.1e-100 105-460
HMMPanther PTHR10177:SF76 CYCLIN-D 2.1e-100 105-460
Seg seg seg NA 45-56
72-88
128-137
345-364
399-414
444-453
Pseudomolecule
Chromosome Start End Strand
201153823511540245+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00018.1 maker_non_over exon 1356900 1357169 . - . ID=Zjn_sc00018.1.g03100.1.am.mk:exon:6
Zjn_sc00018.1 maker_non_over exon 1357418 1357511 . - . ID=Zjn_sc00018.1.g03100.1.am.mk:exon:5
Zjn_sc00018.1 maker_non_over exon 1357602 1357834 . - . ID=Zjn_sc00018.1.g03100.1.am.mk:exon:4
Zjn_sc00018.1 maker_non_over exon 1357945 1358043 . - . ID=Zjn_sc00018.1.g03100.1.am.mk:exon:3
Zjn_sc00018.1 maker_non_over exon 1358119 1358205 . - . ID=Zjn_sc00018.1.g03100.1.am.mk:exon:2
Zjn_sc00018.1 maker_non_over exon 1358311 1358910 . - . ID=Zjn_sc00018.1.g03100.1.am.mk:exon:1

Top