Z. japonica Nagirizaki
Zjn_sc00018.1.g02690.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G69010.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
291 |
56 |
236 |
1e-34 |
106.9 |
28.2 |
38.8 |
| Subject |
311 |
47 |
233 |
|
| Annot |
| Symbols: BIM2 | BES1-interacting Myc-like protein 2 | chr1:25941804-25943599 FORWARD LENGTH=311 |
| NR |
ref|XP_002460394.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
291 |
13 |
291 |
e-115 |
174.2 |
76.3 |
81.1 |
| Subject |
507 |
195 |
507 |
|
| Annot |
hypothetical protein SORBIDRAFT_02g027460 [Sorghum bicolor] gi|241923771|gb|EER96915.1| hypothetical protein SORBIDRAFT_02g027460 [Sorghum bicolor] |
| IRGSP |
Os09t0475400-01_chr09_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
291 |
9 |
291 |
e-100 |
173.2 |
73.5 |
79 |
| Subject |
504 |
159 |
504 |
|
| Annot |
|
| Sbicolor |
Sobic.002G236200.4.p|Chr02|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
291 |
13 |
291 |
e-118 |
174.2 |
76.3 |
81.1 |
| Subject |
507 |
195 |
507 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00018.1.g02690.1.sm.mkhc |
length: 291 aa. |
| IPR011598 |
Myc-type, basic helix-loop-helix (bHLH) domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| Gene3D |
G3DSA:4.10.280.10 |
no description |
2.8e-23 |
51-125 |
| HMMPfam |
PF00010 |
HLH |
2.8e-15 |
56-105 |
| HMMSmart |
SM00353 |
helix |
2.7e-13 |
60-110 |
| ProfileScan |
PS50888 |
BHLH |
16.736 |
54-104 |
| superfamily |
SSF47459 |
HLH, |
9.7e-19 |
52-128 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
101-122 |
| HMMPanther |
PTHR12565 |
STEROL |
5.6e-62 |
1-236 |
| HMMPanther |
PTHR12565:SF7 |
BASIC |
5.6e-62 |
1-236 |
| Seg |
seg |
seg |
NA |
2-23 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 20 | 11741417 | 11745846 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00018.1 |
maker |
exon |
1151299 |
1151675 |
. |
- |
. |
ID=Zjn_sc00018.1.g02690.1.sm.mkhc:exon:8 |
| Zjn_sc00018.1 |
maker |
exon |
1151759 |
1151812 |
. |
- |
. |
ID=Zjn_sc00018.1.g02690.1.sm.mkhc:exon:7 |
| Zjn_sc00018.1 |
maker |
exon |
1152142 |
1152260 |
. |
- |
. |
ID=Zjn_sc00018.1.g02690.1.sm.mkhc:exon:6 |
| Zjn_sc00018.1 |
maker |
exon |
1152363 |
1152564 |
. |
- |
. |
ID=Zjn_sc00018.1.g02690.1.sm.mkhc:exon:5 |
| Zjn_sc00018.1 |
maker |
exon |
1152798 |
1152893 |
. |
- |
. |
ID=Zjn_sc00018.1.g02690.1.sm.mkhc:exon:4 |
| Zjn_sc00018.1 |
maker |
exon |
1152978 |
1153047 |
. |
- |
. |
ID=Zjn_sc00018.1.g02690.1.sm.mkhc:exon:3 |
| Zjn_sc00018.1 |
maker |
exon |
1153148 |
1153274 |
. |
- |
. |
ID=Zjn_sc00018.1.g02690.1.sm.mkhc:exon:2 |
| Zjn_sc00018.1 |
maker |
exon |
1155638 |
1155728 |
. |
- |
. |
ID=Zjn_sc00018.1.g02690.1.sm.mkhc:exon:1 |