Z. japonica Nagirizaki
Zjn_sc00018.1.g02510.1.cf.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G17480.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 414 14 248 5e-16 90.1 16.7 27.1
Subject 373 6 241
Annot | Symbols: | F-box and associated interaction domains-containing protein | chr3:5983199-5984320 FORWARD LENGTH=373
NR ref|XP_002460406.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 414 1 412 e-165 100.7 70.3 77.3
Subject 417 1 409
Annot hypothetical protein SORBIDRAFT_02g027685 [Sorghum bicolor] gi|241923783|gb|EER96927.1| hypothetical protein SORBIDRAFT_02g027685 [Sorghum bicolor]
IRGSP Os09t0517800-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 414 22 410 4e-73 98.6 39.9 53.4
Subject 408 24 403
Annot
Sbicolor Sobic.002G239300.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 414 1 412 e-168 100.7 70.3 77.3
Subject 417 1 409
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00018.1.g02510.1.cf.mkhc length: 414 aa.
IPR001810 F-box domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00646 F-box 3.3e-09 21-56
HMMSmart SM00256 A 7.3e-08 19-59
superfamily SSF81383 F-box 2.1e-13 6-72
IPR013187 F-box associated domain, type 3
HMMPfam PF08268 FBA_3 6e-05 220-329
IPR017451 F-box associated interaction domain
HMMTigr TIGR01640 F_box_assoc_1: 7.8e-28 114-350
no_ID  
Gene3D G3DSA:1.20.1280.50 no description 2.2e-07 20-55
HMMPanther PTHR31790 FAMILY 1.6e-15 19-256
Seg seg seg NA 23-38
Pseudomolecule
Chromosome Start End Strand
201181734811828866+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00018.1 maker exon 1068279 1069669 . - . ID=Zjn_sc00018.1.g02510.1.cf.mkhc:exon:2
Zjn_sc00018.1 maker exon 1078512 1079797 . - . ID=Zjn_sc00018.1.g02510.1.cf.mkhc:exon:1

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