Z. japonica Nagirizaki
Zjn_sc00018.1.g02480.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 No_hits
NR ref|XP_002460408.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 320 1 195 2e-62 113.1 38.1 46.3
Subject 362 33 223
Annot hypothetical protein SORBIDRAFT_02g027700 [Sorghum bicolor] gi|241923785|gb|EER96929.1| hypothetical protein SORBIDRAFT_02g027700 [Sorghum bicolor]
IRGSP Os09t0517800-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 320 1 195 2e-55 127.5 34.4 42.8
Subject 408 1 196
Annot
Sbicolor Sobic.002G239600.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 320 1 195 4e-66 130 38.1 46.3
Subject 416 1 191
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00018.1.g02480.1.am.mk length: 320 aa.
IPR001810 F-box domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00646 F-box 7.5e-07 19-57
HMMSmart SM00256 A 0.0022 22-62
ProfileScan PS50181 FBOX 8.915 16-62
superfamily SSF81383 F-box 8.8e-11 9-65
IPR017451 F-box associated interaction domain
HMMTigr TIGR01640 F_box_assoc_1: 3.7e-11 115-201
no_ID  
Gene3D G3DSA:1.20.1280.50 no description 1.5e-06 13-57
Pseudomolecule
Chromosome Start End Strand
201183928111841753+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00018.1 maker_non_over exon 1055392 1055475 . - . ID=Zjn_sc00018.1.g02480.1.am.mk:exon:5
Zjn_sc00018.1 maker_non_over exon 1056233 1056331 . - . ID=Zjn_sc00018.1.g02480.1.am.mk:exon:4
Zjn_sc00018.1 maker_non_over exon 1056659 1056786 . - . ID=Zjn_sc00018.1.g02480.1.am.mk:exon:3
Zjn_sc00018.1 maker_non_over exon 1056918 1056983 . - . ID=Zjn_sc00018.1.g02480.1.am.mk:exon:2
Zjn_sc00018.1 maker_non_over exon 1057279 1057864 . - . ID=Zjn_sc00018.1.g02480.1.am.mk:exon:1

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