Z. japonica Nagirizaki
Zjn_sc00018.1.g01520.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G29570.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 263 1 262 e-136 100.4 86.7 94.3
Subject 264 1 262
Annot | Symbols: PCNA2, ATPCNA2 | proliferating cell nuclear antigen 2 | chr2:12650139-12651598 REVERSE LENGTH=264
NR ref|XP_002453002.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 263 1 263 e-150 100 98.9 100
Subject 263 1 263
Annot hypothetical protein SORBIDRAFT_04g036440 [Sorghum bicolor] gi|241932833|gb|EES05978.1| hypothetical protein SORBIDRAFT_04g036440 [Sorghum bicolor]
IRGSP Os02t0805200-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 263 1 263 e-149 100 96.2 98.9
Subject 263 1 263
Annot
Sbicolor Sobic.004G336600.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 263 1 263 e-153 100 98.9 100
Subject 263 1 263
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00018.1.g01520.1.sm.mkhc length: 263 aa.
IPR000730 Proliferating cell nuclear antigen, PCNA
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006275 regulation of DNA replication    
Molecular Function GO:0030337 DNA polymerase processivity factor activity    
Cellular Component GO:0043626 PCNA complex    
FPrintScan PR00339 PCNACYCLIN 2.9e-70 10-29
34-52
56-80
110-132
203-217
241-258
HAMAP MF_00317 DNApol_clamp_arch 20.232 2-255
HMMPanther PTHR11352 PROLIFERATING 9.4e-159 1-262
HMMTigr TIGR00590 pcna: 2.3e-130 1-259
IPR022648 Proliferating cell nuclear antigen, PCNA, N-terminal
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006275 regulation of DNA replication    
HMMPfam PF00705 PCNA_N 7.1e-61 1-125
IPR022649 Proliferating cell nuclear antigen, PCNA, C-terminal
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006275 regulation of DNA replication    
HMMPfam PF02747 PCNA_C 8e-65 127-254
IPR022659 Proliferating cell nuclear antigen, PCNA, conserved site
PatternScan PS00293 PCNA_2 NA 61-79
PatternScan PS01251 PCNA_1 NA 34-57
no_ID  
Gene3D G3DSA:3.70.10.10 no description 1.2e-121 1-260
HMMPanther PTHR11352:SF0 SUBFAMILY 9.4e-159 1-262
superfamily SSF55979 DNA 2.3e-44 1-126
127-259
Pseudomolecule
Chromosome Start End Strand
201219315912194932+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00018.1 maker exon 702213 702618 . - . ID=Zjn_sc00018.1.g01520.1.sm.mkhc:exon:4
Zjn_sc00018.1 maker exon 703225 703322 . - . ID=Zjn_sc00018.1.g01520.1.sm.mkhc:exon:3
Zjn_sc00018.1 maker exon 703410 703562 . - . ID=Zjn_sc00018.1.g01520.1.sm.mkhc:exon:2
Zjn_sc00018.1 maker exon 703668 703986 . - . ID=Zjn_sc00018.1.g01520.1.sm.mkhc:exon:1

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