Z. japonica Nagirizaki
Zjn_sc00018.1.g01180.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23820.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 955 474 935 e-166 48.2 31.1 37.3
Subject 460 1 451
Annot | Symbols: GAE6 | UDP-D-glucuronate 4-epimerase 6 | chr3:8603645-8605027 FORWARD LENGTH=460
NR ref|XP_002462620.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 955 474 937 0.0 51.7 45.1 46.8
Subject 494 1 471
Annot hypothetical protein SORBIDRAFT_02g029130 [Sorghum bicolor] gi|241925997|gb|EER99141.1| hypothetical protein SORBIDRAFT_02g029130 [Sorghum bicolor]
IRGSP Os08t0526100-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 955 474 954 0.0 50.1 42 44.8
Subject 478 2 477
Annot
Sbicolor Sobic.002G256100.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 955 474 937 0.0 51.7 45.1 46.8
Subject 494 1 471
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00018.1.g01180.1.am.mk length: 955 aa.
IPR001509 NAD-dependent epimerase/dehydratase
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0044237 cellular metabolic process    
Molecular Function GO:0050662 coenzyme binding    
HMMPfam PF01370 Epimerase 1.7e-44 596-831
IPR008089 Nucleotide sugar epimerase
Biological Process GO:0005975 carbohydrate metabolic process    
Molecular Function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives    
FPrintScan PR01713 NUCEPIMERASE 2.9e-26 622-638
813-828
849-864
889-906
IPR016040 NAD(P)-binding domain
Gene3D G3DSA:3.40.50.720 no description 2.8e-49 596-788
no_ID  
Gene3D G3DSA:3.90.25.10 no description 5.9e-24 789-928
HMMPanther PTHR10366 NAD 3.3e-219 589-939
HMMPanther PTHR10366:SF42 UDP-GLUCURONATE 3.3e-219 589-939
Seg seg seg NA 21-38
47-58
414-455
545-562
566-577
932-950
superfamily SSF51735 NAD(P)-binding 5.7e-70 594-929
Pseudomolecule
Chromosome Start End Strand
201236584812370773-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00018.1 maker_non_over exon 526372 526688 . + . ID=Zjn_sc00018.1.g01180.1.am.mk:exon:1
Zjn_sc00018.1 maker_non_over exon 526861 527092 . + . ID=Zjn_sc00018.1.g01180.1.am.mk:exon:2
Zjn_sc00018.1 maker_non_over exon 527240 527562 . + . ID=Zjn_sc00018.1.g01180.1.am.mk:exon:3
Zjn_sc00018.1 maker_non_over exon 527771 527948 . + . ID=Zjn_sc00018.1.g01180.1.am.mk:exon:4
Zjn_sc00018.1 maker_non_over exon 528450 528759 . + . ID=Zjn_sc00018.1.g01180.1.am.mk:exon:5
Zjn_sc00018.1 maker_non_over exon 529790 531297 . + . ID=Zjn_sc00018.1.g01180.1.am.mk:exon:6

Top