Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00018.1.g00080.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00018.1)

BLAST

TAIR10	AT1G78700.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	376	64	372	2e-82	86.4	48.9	57.2
		Subject	325	31	325
		Annot	\| Symbols: BEH4 \| BES1/BZR1 homolog 4 \| chr1:29599854-29601539 FORWARD LENGTH=325
NR	ref\|NP_001136786.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	376	58	376	e-153	94.4	77.7	80.3
		Subject	355	35	355
		Annot	BES transcription factor [Zea mays] gi\|194697092\|gb\|ACF82630.1\| unknown [Zea mays] gi\|195625848\|gb\|ACG34754.1\| brassinazole-resistant 1 protein [Zea mays] gi\|238013710\|gb\|ACR37890.1\| unknown [Zea mays] gi\|323388699\|gb\|ADX60154.1\| BES transcription factor [Zea mays] gi\|323388717\|gb\|ADX60163.1\| MYBGA transcription factor, partial [Zea mays] gi\|413954312\|gb\|AFW86961.1\| brassinazole-resistant 1 protein [Zea mays]
IRGSP	Os06t0552300-01_chr06_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	376	58	376	e-154	94.4	75	79.8
		Subject	355	37	355
		Annot
Sbicolor	Sobic.010G163900.1.p\|Chr10\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	376	58	376	e-155	94.7	78.5	81.1
		Subject	356	35	356
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR008540	BZR1, transcriptional repressor
Zjn_sc00018.1.g00080.1.sm.mkhc				length: 376 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF05687	DUF822	3.8e-56	46-184
no_ID
HMMPanther	PTHR31506	FAMILY	1.1e-115	46-373
HMMPanther	PTHR31506:SF0	SUBFAMILY	1.1e-115	46-373
Seg	seg	seg	NA	46-57 120-154 180-189 203-219 332-343

Pseudomolecule

Chromosome	Start	End	Strand
20	12872859	12875691	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00018.1	maker	exon	21454	22720	.	-	.	ID=Zjn_sc00018.1.g00080.1.sm.mkhc:exon:4
Zjn_sc00018.1	maker	exon	23721	23900	.	-	.	ID=Zjn_sc00018.1.g00080.1.sm.mkhc:exon:3
Zjn_sc00018.1	maker	exon	24126	24193	.	-	.	ID=Zjn_sc00018.1.g00080.1.sm.mkhc:exon:2
Zjn_sc00018.1	maker	exon	24220	24286	.	-	.	ID=Zjn_sc00018.1.g00080.1.sm.mkhc:exon:1