Z. japonica Nagirizaki
Zjn_sc00017.1.g07760.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT4G16110.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
165 |
1 |
154 |
4e-28 |
402.4 |
44.2 |
58.8 |
| Subject |
664 |
106 |
265 |
|
| Annot |
| Symbols: ARR2, RR2 | response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664 |
| NR |
ref|XP_004982951.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
165 |
1 |
154 |
3e-54 |
201.2 |
66.7 |
75.2 |
| Subject |
332 |
88 |
228 |
|
| Annot |
PREDICTED: two-component response regulator EHD1-like [Setaria italica] |
| IRGSP |
Os10t0463400-01_chr10_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
165 |
1 |
164 |
8e-45 |
206.7 |
56.4 |
74.5 |
| Subject |
341 |
89 |
257 |
|
| Annot |
|
| Sbicolor |
Sobic.001G227900.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
165 |
1 |
154 |
3e-55 |
210.3 |
67.9 |
77.6 |
| Subject |
347 |
88 |
243 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00017.1.g07760.1.sm.mk |
length: 165 aa. |
| IPR001005 |
SANT/Myb domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003682 |
chromatin binding |
|
|
| HMMPfam |
PF00249 |
Myb_DNA-binding |
1.5e-06 |
107-154 |
| IPR001789 |
Signal transduction response regulator, receiver domain |
| Molecular Function |
GO:0000156 |
phosphorelay response regulator activity |
|
|
| Biological Process |
GO:0000160 |
phosphorelay signal transduction system |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| ProfileScan |
PS50110 |
RESPONSE_REGULATORY |
9.972 |
1-39 |
| IPR006447 |
Myb domain, plants |
| HMMTigr |
TIGR01557 |
myb_SHAQKYF: |
3.9e-20 |
105-154 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Gene3D |
G3DSA:1.10.10.60 |
no description |
2.1e-20 |
104-154 |
| superfamily |
SSF46689 |
Homeodomain-like |
2.1e-13 |
101-164 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2300 |
no description |
1e-08 |
1-55 |
| HMMPanther |
PTHR24423 |
TWO |
1.7e-15 |
1-46 |
| HMMPanther |
PTHR24423:SF35 |
SUBFAMILY |
1.7e-15 |
1-46 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 8 | 12256258 | 12257479 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00017.1 |
maker_non_over |
exon |
3704624 |
3705008 |
. |
+ |
. |
ID=Zjn_sc00017.1.g07760.1.sm.mk:exon:1 |
| Zjn_sc00017.1 |
maker_non_over |
exon |
3705275 |
3705351 |
. |
+ |
. |
ID=Zjn_sc00017.1.g07760.1.sm.mk:exon:2 |
| Zjn_sc00017.1 |
maker_non_over |
exon |
3705810 |
3705845 |
. |
+ |
. |
ID=Zjn_sc00017.1.g07760.1.sm.mk:exon:3 |