Z. japonica Nagirizaki
Zjn_sc00017.1.g06920.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G30080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 599 160 584 e-109 111.9 38.7 47.4
Subject 670 249 666
Annot | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670
NR ref|XP_004982839.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 599 137 599 0.0 114.2 61.9 66.4
Subject 684 233 684
Annot PREDICTED: auxin response factor 22 [Setaria italica]
IRGSP Os10t0479900-01_chr10_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 599 163 599 0.0 116.5 55.8 61.6
Subject 698 259 698
Annot
Sbicolor Sobic.001G217300.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 599 137 599 0.0 115 61.6 66.4
Subject 689 238 689
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00017.1.g06920.1.am.mkhc length: 599 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 3.2e-10 473-586
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 1.7e-34 191-273
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 22.233 505-583
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 1e-06 116-161
superfamily SSF101936 DNA-binding 1.2e-09 106-159
no_ID  
HMMPanther PTHR31384 FAMILY 6.1e-116 3-395
Seg seg seg NA 39-63
181-195
372-389
478-494
Pseudomolecule
Chromosome Start End Strand
81268859612692358+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00017.1 maker exon 3269745 3270220 . - . ID=Zjn_sc00017.1.g06920.1.am.mkhc:exon:4
Zjn_sc00017.1 maker exon 3270313 3271196 . - . ID=Zjn_sc00017.1.g06920.1.am.mkhc:exon:3
Zjn_sc00017.1 maker exon 3272422 3272754 . - . ID=Zjn_sc00017.1.g06920.1.am.mkhc:exon:2
Zjn_sc00017.1 maker exon 3273022 3273507 . - . ID=Zjn_sc00017.1.g06920.1.am.mkhc:exon:1

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