Z. japonica Nagirizaki
Zjn_sc00017.1.g05610.1.am.mk
Sequence
-
BLAST
| TAIR10 |
AT2G25180.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
417 |
3 |
225 |
2e-49 |
142.9 |
26.6 |
36.5 |
| Subject |
596 |
4 |
219 |
|
| Annot |
| Symbols: ARR12, RR12 | response regulator 12 | chr2:10724490-10726961 REVERSE LENGTH=596 |
| NR |
ref|XP_004967181.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
417 |
12 |
292 |
2e-70 |
162.6 |
38.1 |
46.8 |
| Subject |
678 |
6 |
319 |
|
| Annot |
PREDICTED: two-component response regulator ARR10-like [Setaria italica] |
| IRGSP |
Os06t0647200-01_chr06_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
417 |
1 |
406 |
3e-59 |
142 |
42.9 |
54.9 |
| Subject |
592 |
1 |
442 |
|
| Annot |
|
| Sbicolor |
Sobic.005G050700.1.p|Chr05|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
417 |
10 |
412 |
7e-72 |
166.4 |
44.6 |
58.5 |
| Subject |
694 |
4 |
459 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00017.1.g05610.1.am.mk |
length: 417 aa. |
| IPR001789 |
Signal transduction response regulator, receiver domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000156 |
phosphorelay response regulator activity |
|
|
| Biological Process |
GO:0000160 |
phosphorelay signal transduction system |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF00072 |
Response_reg |
3.8e-23 |
18-127 |
| HMMSmart |
SM00448 |
cheY-homologous |
4.4e-30 |
16-130 |
| ProfileScan |
PS50110 |
RESPONSE_REGULATORY |
32.432 |
17-134 |
| IPR011006 |
CheY-like superfamily |
| superfamily |
SSF52172 |
CheY-like |
8.2e-34 |
13-135 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2300 |
no description |
3.6e-38 |
15-167 |
| HMMPanther |
PTHR26402 |
RESPONSE |
4e-46 |
1-136 |
| HMMPanther |
PTHR26402:SF256TWO-COMPONENT |
RESPONSE |
4e-46 |
1-136 |
| Seg |
seg |
seg |
NA |
221-234 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 8 | 13323626 | 13326180 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00017.1 |
maker_non_over |
exon |
2635923 |
2636046 |
. |
+ |
. |
ID=Zjn_sc00017.1.g05610.1.am.mk:exon:1 |
| Zjn_sc00017.1 |
maker_non_over |
exon |
2636185 |
2636343 |
. |
+ |
. |
ID=Zjn_sc00017.1.g05610.1.am.mk:exon:2 |
| Zjn_sc00017.1 |
maker_non_over |
exon |
2636458 |
2636825 |
. |
+ |
. |
ID=Zjn_sc00017.1.g05610.1.am.mk:exon:3 |
| Zjn_sc00017.1 |
maker_non_over |
exon |
2637875 |
2638477 |
. |
+ |
. |
ID=Zjn_sc00017.1.g05610.1.am.mk:exon:4 |