Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00017.1.g04940.1.am.mk

Sequence

	Init: Term: reverse complement

BLAST

TAIR10	AT3G48560.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	720	141	720	0.0	93.1	60	69.7
		Subject	670	91	670
		Annot	\| Symbols: CSR1, ALS, AHAS, TZP5, IMR1 \| chlorsulfuron/imidazolinone resistant 1 \| chr3:18001530-18003542 REVERSE LENGTH=670
NR	sp\|Q41768.1\|ILVB1_MAIZE		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	720	93	720	0.0	88.6	78.8	82.4
		Subject	638	19	638
		Annot	RecName: Full=Acetolactate synthase 1, chloroplastic; AltName: Full=Acetohydroxy-acid synthase 1; Flags: Precursor gi\|22139\|emb\|CAA45116.1\| acetohydroxyacid synthase [Zea mays] gi\|413936990\|gb\|AFW71541.1\| acetolactate synthase 1, Precursor [Zea mays]
IRGSP	Os04t0389800-01_chr04_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	720	133	720	0.0	92.1	66.7	74
		Subject	663	71	663
		Annot
Sbicolor	Sobic.004G155800.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	720	266	720	0.0	65.7	58.3	60.6
		Subject	473	19	473
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR011766	Thiamine pyrophosphate enzyme, C-terminal TPP-binding
Zjn_sc00017.1.g04940.1.am.mk				length: 720 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003824	catalytic activity
Molecular Function	GO:0030976	thiamine pyrophosphate binding
HMMPfam	PF02775	TPP_enzyme_C	4.5e-45	534-689
IPR012000	Thiamine pyrophosphate enzyme, central domain
Molecular Function	GO:0000287	magnesium ion binding
Molecular Function	GO:0030976	thiamine pyrophosphate binding
HMMPfam	PF00205	TPP_enzyme_M	5.2e-41	340-472
IPR012001	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain
Molecular Function	GO:0030976	thiamine pyrophosphate binding
HMMPfam	PF02776	TPP_enzyme_N	7.4e-53	148-311
IPR012846	Acetolactate synthase, large subunit, biosynthetic
Molecular Function	GO:0000287	magnesium ion binding
Molecular Function	GO:0003984	acetolactate synthase activity
Biological Process	GO:0009082	branched-chain amino acid biosynthetic process
Molecular Function	GO:0030976	thiamine pyrophosphate binding
Molecular Function	GO:0050660	flavin adenine dinucleotide binding
HMMPanther	PTHR18968:SF13	ACETOLACTATE	0	52-720
HMMTigr	TIGR00118	acolac_lg:	2.3e-204	148-712
no_ID
Gene3D	G3DSA:3.40.50.1220	no description	9.2e-60	334-503
Gene3D	G3DSA:3.40.50.970	no description	9.6e-72	147-318 509-713
HMMPanther	PTHR18968	THIAMINE	0	52-720
Seg	seg	seg	NA	60-99 105-118 120-144 225-237 558-580
superfamily	SSF52467	DHS-like	1e-60	330-503
superfamily	SSF52518	Thiamin	8e-58	510-715 136-330

Pseudomolecule

Chromosome	Start	End	Strand
8	13751190	13753456	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00017.1	maker_non_over	exon	2208647	2210770	.	-	.	ID=Zjn_sc00017.1.g04940.1.am.mk:exon:2
Zjn_sc00017.1	maker_non_over	exon	2210875	2210913	.	-	.	ID=Zjn_sc00017.1.g04940.1.am.mk:exon:1