Z. japonica Nagirizaki
Zjn_sc00017.1.g04190.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G03650.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 446 94 270 1e-53 180.5 22.6 28.5
Subject 805 63 237
Annot | Symbols: SBE2.2 | starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805
NR ref|XP_003575058.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 446 2 270 4e-83 187.2 35.4 45.1
Subject 835 4 269
Annot PREDICTED: 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic-like [Brachypodium distachyon]
IRGSP Os04t0409200-00_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 446 87 270 1e-60 57.2 25.1 31.2
Subject 255 4 186
Annot
Sbicolor Sobic.004G163700.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 446 5 270 4e-72 180 34.1 40.4
Subject 803 4 237
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00017.1.g04190.1.sm.mkhc length: 446 aa.
IPR004193 Glycoside hydrolase, family 13, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds    
Biological Process GO:0005975 carbohydrate metabolic process    
HMMPfam PF02922 CBM_48 5.2e-14 202-268
IPR013783 Immunoglobulin-like fold
Gene3D G3DSA:2.60.40.10 no description 3.8e-19 193-291
IPR014756 Immunoglobulin E-set
superfamily SSF81296 E 2.3e-15 195-310
IPR015902 Glycoside hydrolase, family 13
Molecular Function GO:0003824 catalytic activity    
HMMPanther PTHR10357 ALPHA-AMYLASE 1.5e-48 109-270
no_ID  
HMMPanther PTHR10357:SF27 1,4-ALPHA-GLUCAN-BRANCHING 1.5e-48 109-270
Seg seg seg NA 6-37
174-184
Pseudomolecule
Chromosome Start End Strand
81406843814076948-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00017.1 maker exon 1885155 1885317 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:1
Zjn_sc00017.1 maker exon 1885462 1885592 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:2
Zjn_sc00017.1 maker exon 1886322 1886551 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:3
Zjn_sc00017.1 maker exon 1887033 1887131 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:4
Zjn_sc00017.1 maker exon 1887209 1887251 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:5
Zjn_sc00017.1 maker exon 1887376 1887435 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:6
Zjn_sc00017.1 maker exon 1887692 1887772 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:7
Zjn_sc00017.1 maker exon 1889818 1889928 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:8
Zjn_sc00017.1 maker exon 1890406 1890509 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:9
Zjn_sc00017.1 maker exon 1891456 1891497 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:10
Zjn_sc00017.1 maker exon 1892544 1892589 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:11
Zjn_sc00017.1 maker exon 1892748 1892806 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:12
Zjn_sc00017.1 maker exon 1892902 1893665 . + . ID=Zjn_sc00017.1.g04190.1.sm.mkhc:exon:13

Top