Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00017.1.g04090.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00017.1)

BLAST

TAIR10	AT5G03840.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	157	2	157	6e-58	112.7	70.7	86.6
		Subject	177	6	177
		Annot	\| Symbols: TFL1, TFL-1 \| PEBP (phosphatidylethanolamine-binding protein) family protein \| chr5:1024760-1025796 REVERSE LENGTH=177
NR	ref\|NP_001173006.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	157	1	157	2e-72	110.2	88.5	94.9
		Subject	173	1	173
		Annot	Os02g0531600 [Oryza sativa Japonica Group] gi\|50251385\|dbj\|BAD28412.1\| putative Cen-like protein [Oryza sativa Japonica Group] gi\|125539749\|gb\|EAY86144.1\| hypothetical protein OsI_07517 [Oryza sativa Indica Group] gi\|125582374\|gb\|EAZ23305.1\| hypothetical protein OsJ_07001 [Oryza sativa Japonica Group] gi\|215769193\|dbj\|BAH01422.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|255670967\|dbj\|BAH91735.1\| Os02g0531600 [Oryza sativa Japonica Group]
IRGSP	Os02t0531600-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	157	1	157	2e-75	110.2	88.5	94.9
		Subject	173	1	173
		Annot
Sbicolor	Sobic.004G165100.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	157	1	157	4e-73	110.2	85.4	94.3
		Subject	173	1	173
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR008914	Phosphatidylethanolamine-binding protein PEBP
Zjn_sc00017.1.g04090.1.am.mk				length: 157 aa.
method	AccNumber	shortName	E-value	location
Gene3D	G3DSA:3.90.280.10	no description	1.5e-26	2-68 73-153
HMMPfam	PF01161	PBP	3.8e-08	71-146
superfamily	SSF49777	PEBP-like	1.6e-37	11-152
no_ID
HMMPanther	PTHR11362	PHOSPHATIDYLETHANOLAMINE-BINDING	4.6e-48	3-157

Pseudomolecule

Chromosome	Start	End	Strand
8	14113876	14114954	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00017.1	maker_non_over	exon	1847149	1847363	.	+	.	ID=Zjn_sc00017.1.g04090.1.am.mk:exon:1
Zjn_sc00017.1	maker_non_over	exon	1847790	1847830	.	+	.	ID=Zjn_sc00017.1.g04090.1.am.mk:exon:2
Zjn_sc00017.1	maker_non_over	exon	1848010	1848227	.	+	.	ID=Zjn_sc00017.1.g04090.1.am.mk:exon:3