Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00017.1.g03870.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00017.1)

BLAST

TAIR10	AT2G36010.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	242	68	221	1e-38	212.4	37.6	47.9
		Subject	514	292	484
		Annot	\| Symbols: E2F3, ATE2FA \| E2F transcription factor 3 \| chr2:15119688-15122893 FORWARD LENGTH=514
NR	gb\|AFW62537.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	242	73	221	9e-55	175.6	49.6	54.1
		Subject	425	227	425
		Annot	hypothetical protein ZEAMMB73_265177 [Zea mays]
IRGSP	Os02t0537500-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	242	73	211	7e-54	196.3	45.9	51.7
		Subject	475	232	422
		Annot
Sbicolor	Sobic.004G168300.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	242	73	215	2e-50	188	44.2	49.2
		Subject	455	227	410
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR015633	E2F Family
Zjn_sc00017.1.g03870.1.sm.mkhc				length: 242 aa.
method	AccNumber	shortName	E-value	location
HMMPanther	PTHR12081	TRANSCRIPTION	8.9e-52	73-201
no_ID
HMMPanther	PTHR12081:SF18	TRANSCRIPTION	8.9e-52	73-201
Seg	seg	seg	NA	42-55 185-194
superfamily	SSF144074	E2F-DP	1.9e-23	66-156

Pseudomolecule

Chromosome	Start	End	Strand
8	14214624	14218828	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00017.1	maker	exon	1743275	1743490	.	+	.	ID=Zjn_sc00017.1.g03870.1.sm.mkhc:exon:1
Zjn_sc00017.1	maker	exon	1745639	1745691	.	+	.	ID=Zjn_sc00017.1.g03870.1.sm.mkhc:exon:2
Zjn_sc00017.1	maker	exon	1745989	1746037	.	+	.	ID=Zjn_sc00017.1.g03870.1.sm.mkhc:exon:3
Zjn_sc00017.1	maker	exon	1746181	1746246	.	+	.	ID=Zjn_sc00017.1.g03870.1.sm.mkhc:exon:4
Zjn_sc00017.1	maker	exon	1746349	1746425	.	+	.	ID=Zjn_sc00017.1.g03870.1.sm.mkhc:exon:5
Zjn_sc00017.1	maker	exon	1746502	1746631	.	+	.	ID=Zjn_sc00017.1.g03870.1.sm.mkhc:exon:6
Zjn_sc00017.1	maker	exon	1746975	1747010	.	+	.	ID=Zjn_sc00017.1.g03870.1.sm.mkhc:exon:7
Zjn_sc00017.1	maker	exon	1747378	1747479	.	+	.	ID=Zjn_sc00017.1.g03870.1.sm.mkhc:exon:8