Z. japonica Nagirizaki
Zjn_sc00017.1.g03750.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G43710.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 451 26 451 0.0 106.9 75.8 83.4
Subject 482 30 482
Annot | Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482
NR ref|XP_004952686.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 451 1 451 0.0 108.4 90.7 94
Subject 489 1 489
Annot PREDICTED: serine decarboxylase 1 [Setaria italica]
IRGSP Os02t0541325-00_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 451 89 451 0.0 87.8 75.2 78.3
Subject 396 1 395
Annot
Sbicolor Sobic.004G170200.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 451 1 451 0.0 109.5 91.6 94.7
Subject 494 1 494
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00017.1.g03750.1.sm.mkhc length: 451 aa.
IPR002129 Pyridoxal phosphate-dependent decarboxylase
method AccNumber shortName E-value location
Molecular Function GO:0016831 carboxy-lyase activity    
Biological Process GO:0019752 carboxylic acid metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
HMMPfam PF00282 Pyridoxal_deC 2.7e-08 147-263
274-373
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 3.8e-05 145-262
273-345
IPR015424 Pyridoxal phosphate-dependent transferase
superfamily SSF53383 PLP-dependent 8.3e-61 85-429
IPR021115 Pyridoxal-phosphate binding site
Molecular Function GO:0016831 carboxy-lyase activity    
PatternScan PS00392 DDC_GAD_HDC_YDC NA 275-296
no_ID  
HMMPanther PTHR11999 GROUP 1.4e-206 127-451
HMMPanther PTHR11999:SF4 GROUP 1.4e-206 127-451
Seg seg seg NA 23-54
Pseudomolecule
Chromosome Start End Strand
81429216314295435+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00017.1 maker exon 1666668 1666785 . - . ID=Zjn_sc00017.1.g03750.1.sm.mkhc:exon:6
Zjn_sc00017.1 maker exon 1666810 1667506 . - . ID=Zjn_sc00017.1.g03750.1.sm.mkhc:exon:5
Zjn_sc00017.1 maker exon 1667709 1667746 . - . ID=Zjn_sc00017.1.g03750.1.sm.mkhc:exon:4
Zjn_sc00017.1 maker exon 1667819 1668012 . - . ID=Zjn_sc00017.1.g03750.1.sm.mkhc:exon:3
Zjn_sc00017.1 maker exon 1668125 1668356 . - . ID=Zjn_sc00017.1.g03750.1.sm.mkhc:exon:2
Zjn_sc00017.1 maker exon 1669616 1669940 . - . ID=Zjn_sc00017.1.g03750.1.sm.mkhc:exon:1

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