Z. japonica Nagirizaki
Zjn_sc00017.1.g03580.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G09710.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 872 13 349 7e-48 74.5 15 21.1
Subject 650 11 342
Annot | Symbols: | Homeodomain-like superfamily protein | chr1:3141119-3144232 FORWARD LENGTH=650
NR ref|XP_004952835.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 872 14 866 0.0 104.4 56.2 67.2
Subject 910 16 882
Annot PREDICTED: nascent polypeptide-associated complex subunit alpha, muscle-specific form-like [Setaria italica]
IRGSP Os02t0551400-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 872 13 763 e-149 82.5 41.5 51
Subject 719 30 715
Annot
Sbicolor Sobic.002G320500.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 872 2 832 0.0 94 52.4 63.1
Subject 820 3 814
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00017.1.g03580.1.sm.mkhc length: 872 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 1.6e-06 205-247
HMMSmart SM00717 SANT 2.7e-05 201-253
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 1.9e-09 197-249
superfamily SSF46689 Homeodomain-like 2.6e-08 195-262
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 9.382 197-256
no_ID  
HMMPanther PTHR21717 TELOMERIC 3.8e-32 20-529
HMMPanther PTHR21717:SF9 TELOMERIC 3.8e-32 20-529
Seg seg seg NA 1-17
86-99
111-126
197-207
353-374
392-405
428-441
580-592
733-750
Pseudomolecule
Chromosome Start End Strand
81437333914378145+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00017.1 maker exon 1583958 1586196 . - . ID=Zjn_sc00017.1.g03580.1.sm.mkhc:exon:6
Zjn_sc00017.1 maker exon 1586302 1586461 . - . ID=Zjn_sc00017.1.g03580.1.sm.mkhc:exon:5
Zjn_sc00017.1 maker exon 1586791 1587156 . - . ID=Zjn_sc00017.1.g03580.1.sm.mkhc:exon:4
Zjn_sc00017.1 maker exon 1588106 1588192 . - . ID=Zjn_sc00017.1.g03580.1.sm.mkhc:exon:3
Zjn_sc00017.1 maker exon 1588403 1588598 . - . ID=Zjn_sc00017.1.g03580.1.sm.mkhc:exon:2
Zjn_sc00017.1 maker exon 1588679 1588764 . - . ID=Zjn_sc00017.1.g03580.1.sm.mkhc:exon:1

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