Z. japonica Nagirizaki
Zjn_sc00017.1.g03010.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G09130.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 348 152 245 6e-19 102.6 12.6 17.5
Subject 357 79 176
Annot | Symbols: | RING/U-box superfamily protein | chr4:5815849-5816922 FORWARD LENGTH=357
NR ref|XP_004952757.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 348 74 346 3e-61 89.7 46 53.4
Subject 312 1 293
Annot PREDICTED: E3 ubiquitin-protein ligase EL5-like [Setaria italica]
IRGSP Os02t0561800-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 348 97 346 2e-37 93.4 36.5 42.2
Subject 325 31 291
Annot
Sbicolor Sobic.004G181300.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 348 73 346 6e-62 91.4 46.8 53.7
Subject 318 22 316
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00017.1.g03010.1.am.mk length: 348 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 8e-16 190-233
HMMSmart SM00184 Ring 2.6e-08 191-232
ProfileScan PS50089 ZF_RING_2 12.902 191-233
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 2.8e-19 188-236
no_ID  
HMMPanther PTHR14155 RING 1e-33 103-260
Seg seg seg NA 81-88
138-160
236-256
325-337
superfamily SSF57850 RING/U-box 1.2e-20 164-258
Pseudomolecule
Chromosome Start End Strand
81466908314670251-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00017.1 maker_non_over exon 1291852 1292053 . + . ID=Zjn_sc00017.1.g03010.1.am.mk:exon:1
Zjn_sc00017.1 maker_non_over exon 1292146 1292905 . + . ID=Zjn_sc00017.1.g03010.1.am.mk:exon:2
Zjn_sc00017.1 maker_non_over exon 1292936 1293020 . + . ID=Zjn_sc00017.1.g03010.1.am.mk:exon:3

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