Z. japonica Nagirizaki
Zjn_sc00017.1.g02290.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G37940.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 122 1 87 4e-35 186.9 54.9 64.8
Subject 228 1 87
Annot | Symbols: AGL21 | AGAMOUS-like 21 | chr4:17835695-17838621 REVERSE LENGTH=228
NR dbj|BAD29571.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 122 1 103 2e-47 193.4 78.7 82.8
Subject 236 1 107
Annot putative transcription factor MADS27 [Oryza sativa Japonica Group]
IRGSP Os02t0579600-00_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 122 1 87 1e-44 196.7 67.2 69.7
Subject 240 1 87
Annot
Sbicolor Sobic.004G191900.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 122 1 91 3e-45 74.6 70.5 72.1
Subject 91 1 91
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00017.1.g02290.1.sm.mkhc length: 122 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 3.7e-28 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 4.1e-26 10-59
HMMSmart SM00432 no description 2.2e-39 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 31.651 1-61
superfamily SSF55455 SRF-like 1.5e-31 2-94
no_ID  
HMMPanther PTHR11945 MADS 1.1e-47 1-77
HMMPanther PTHR11945:SF19 MADS 1.1e-47 1-77
Pseudomolecule
Chromosome Start End Strand
81501371315021354+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00017.1 maker exon 940749 940805 . - . ID=Zjn_sc00017.1.g02290.1.sm.mkhc:exon:4
Zjn_sc00017.1 maker exon 943015 943065 . - . ID=Zjn_sc00017.1.g02290.1.sm.mkhc:exon:3
Zjn_sc00017.1 maker exon 946772 946850 . - . ID=Zjn_sc00017.1.g02290.1.sm.mkhc:exon:2
Zjn_sc00017.1 maker exon 947488 948390 . - . ID=Zjn_sc00017.1.g02290.1.sm.mkhc:exon:1

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