Z. japonica Nagirizaki
Zjn_sc00017.1.g01640.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G35260.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 377 1 377 0.0 97.3 83.8 89.4
Subject 367 1 367
Annot | Symbols: IDH1, IDH-I | isocitrate dehydrogenase 1 | chr4:16774494-16776233 REVERSE LENGTH=367
NR ref|NP_001141883.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 377 1 376 0.0 98.9 93.4 96.3
Subject 373 1 372
Annot hypothetical protein [Zea mays] gi|194706290|gb|ACF87229.1| unknown [Zea mays] gi|413922890|gb|AFW62822.1| hypothetical protein ZEAMMB73_715539 [Zea mays]
IRGSP Os02t0595500-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 377 1 377 0.0 100.3 93.4 96.6
Subject 378 1 378
Annot
Sbicolor Sobic.004G202100.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 377 1 376 0.0 99.5 93.6 96.8
Subject 375 1 374
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00017.1.g01640.1.sm.mkhc length: 377 aa.
IPR001804 Isocitrate and isopropylmalate dehydrogenases family
method AccNumber shortName E-value location
Molecular Function GO:0000287 magnesium ion binding    
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    
Molecular Function GO:0051287 NAD binding    
Biological Process GO:0055114 oxidation-reduction process    
HMMPanther PTHR11835 DECARBOXYLATING 4e-190 33-377
IPR004434 Isocitrate dehydrogenase NAD-dependent
Molecular Function GO:0004449 isocitrate dehydrogenase (NAD+) activity    
Biological Process GO:0006099 tricarboxylic acid cycle    
Biological Process GO:0055114 oxidation-reduction process    
HMMTigr TIGR00175 mito_nad_idh: 8.4e-158 47-376
IPR024084 Isopropylmalate dehydrogenase-like domain
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
Gene3D G3DSA:3.40.718.10 no description 2.9e-126 50-377
HMMPfam PF00180 Iso_dh 1.7e-79 50-372
no_ID  
HMMPanther PTHR11835:SF1 ISOCITRATE 4e-190 33-377
Seg seg seg NA 2-28
267-290
superfamily SSF53659 Isocitrate/Isopropylmalate 1.4e-108 50-376
Pseudomolecule
Chromosome Start End Strand
81532009515323924-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00017.1 maker exon 638179 638829 . + . ID=Zjn_sc00017.1.g01640.1.sm.mkhc:exon:1
Zjn_sc00017.1 maker exon 640572 640811 . + . ID=Zjn_sc00017.1.g01640.1.sm.mkhc:exon:2
Zjn_sc00017.1 maker exon 641179 641257 . + . ID=Zjn_sc00017.1.g01640.1.sm.mkhc:exon:3
Zjn_sc00017.1 maker exon 641506 642008 . + . ID=Zjn_sc00017.1.g01640.1.sm.mkhc:exon:4

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