Z. japonica Nagirizaki
Zjn_sc00017.1.g01250.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G13440.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 288 3 285 e-142 107.6 85.8 92.4
Subject 310 5 308
Annot | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate dehydrogenase C2 | chr1:4608465-4610494 REVERSE LENGTH=310
NR ref|XP_004953003.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 288 1 288 e-153 117 95.8 98.6
Subject 337 1 337
Annot PREDICTED: glyceraldehyde-3-phosphate dehydrogenase 3, cytosolic [Setaria italica]
IRGSP Os04t0486600-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 288 1 288 e-154 117 94.4 97.2
Subject 337 1 337
Annot
Sbicolor Sobic.004G205100.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 288 1 288 e-153 117 94.1 98.3
Subject 337 1 337
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00017.1.g01250.1.sm.mkhc length: 288 aa.
IPR016040 NAD(P)-binding domain
method AccNumber shortName E-value location
Gene3D G3DSA:3.40.50.720 no description 1.7e-45 1-113
IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
Molecular Function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF00044 Gp_dh_N 3.7e-37 4-115
HMMSmart SM00846 Glyceraldehyde 5.3e-48 4-120
IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
Molecular Function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF02800 Gp_dh_C 2.2e-72 111-267
IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family
Molecular Function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00078 G3PDHDRGNASE 8.8e-27 126-142
183-200
223-238
HMMPIR PIRSF000149 Glyceraldehyde-3-phosphate 1.2e-120 2-288
HMMPanther PTHR10836 GLYCERALDEHYDE 3.5e-201 1-288
no_ID  
Gene3D G3DSA:3.30.360.10 no description 1.1e-77 114-269
superfamily SSF51735 NAD(P)-binding 2.7e-40 4-144
superfamily SSF55347 Glyceraldehyde-3-phosphate 1.8e-74 111-268
Pseudomolecule
Chromosome Start End Strand
81548618315489629-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00017.1 maker exon 472474 472585 . + . ID=Zjn_sc00017.1.g01250.1.sm.mkhc:exon:1
Zjn_sc00017.1 maker exon 472698 472721 . + . ID=Zjn_sc00017.1.g01250.1.sm.mkhc:exon:2
Zjn_sc00017.1 maker exon 472831 472931 . + . ID=Zjn_sc00017.1.g01250.1.sm.mkhc:exon:3
Zjn_sc00017.1 maker exon 473597 473712 . + . ID=Zjn_sc00017.1.g01250.1.sm.mkhc:exon:4
Zjn_sc00017.1 maker exon 473790 473889 . + . ID=Zjn_sc00017.1.g01250.1.sm.mkhc:exon:5
Zjn_sc00017.1 maker exon 474209 474269 . + . ID=Zjn_sc00017.1.g01250.1.sm.mkhc:exon:6
Zjn_sc00017.1 maker exon 474361 474458 . + . ID=Zjn_sc00017.1.g01250.1.sm.mkhc:exon:7
Zjn_sc00017.1 maker exon 474978 475120 . + . ID=Zjn_sc00017.1.g01250.1.sm.mkhc:exon:8
Zjn_sc00017.1 maker exon 475262 475345 . + . ID=Zjn_sc00017.1.g01250.1.sm.mkhc:exon:9
Zjn_sc00017.1 maker exon 475467 475556 . + . ID=Zjn_sc00017.1.g01250.1.sm.mkhc:exon:10
Zjn_sc00017.1 maker exon 475641 475818 . + . ID=Zjn_sc00017.1.g01250.1.sm.mkhc:exon:11
Zjn_sc00017.1 maker exon 475848 475920 . + . ID=Zjn_sc00017.1.g01250.1.sm.mkhc:exon:12

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