Z. japonica Nagirizaki
Zjn_sc00017.1.g00830.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G25570.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 575 188 533 e-102 60.7 33.9 41.7
Subject 349 3 346
Annot | Symbols: | Adenosylmethionine decarboxylase family protein | chr3:9287413-9288462 REVERSE LENGTH=349
NR gb|ADC45379.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 575 177 572 0.0 69 61.9 64.3
Subject 397 1 396
Annot S-adenosylmethionine decarboxylase [Cleistogenes songorica]
IRGSP Os02t0611200-02_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 575 177 575 0.0 68.7 54.8 60
Subject 395 1 395
Annot
Sbicolor Sobic.004G211900.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 575 188 573 0.0 69.2 54.3 59.7
Subject 398 14 398
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00017.1.g00830.1.am.mkhc length: 575 aa.
IPR001985 S-adenosylmethionine decarboxylase
method AccNumber shortName E-value location
Molecular Function GO:0004014 adenosylmethionine decarboxylase activity    
Biological Process GO:0006597 spermine biosynthetic process    
Biological Process GO:0008295 spermidine biosynthetic process    
HMMPanther PTHR11570 S-ADENOSYLMETHIONINE 6.4e-147 175-539
HMMPfam PF01536 SAM_decarbox 5.6e-128 189-520
IPR012511 S-adenosyl-l-methionine decarboxylase leader peptide
HMMPfam PF08132 AdoMetDC_leader 4.9e-22 107-151
IPR016067 S-adenosylmethionine decarboxylase, core
Molecular Function GO:0004014 adenosylmethionine decarboxylase activity    
Biological Process GO:0008295 spermidine biosynthetic process    
Gene3D G3DSA:3.60.90.10 no description 9.3e-110 189-520
superfamily SSF56276 S-adenosylmethionine 4.8e-125 196-521
IPR018166 S-adenosylmethionine decarboxylase, conserved site
Molecular Function GO:0004014 adenosylmethionine decarboxylase activity    
PatternScan PS01336 ADOMETDC NA 248-258
IPR018167 S-adenosylmethionine decarboxylase subgroup
Molecular Function GO:0004014 adenosylmethionine decarboxylase activity    
HMMTigr TIGR00535 SAM_DCase: 2e-139 193-520
no_ID  
HMMPanther PTHR11570:SF0 SUBFAMILY 6.4e-147 175-539
Seg seg seg NA 107-120
281-293
Pseudomolecule
Chromosome Start End Strand
81563107215633469+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00017.1 maker exon 328634 329853 . - . ID=Zjn_sc00017.1.g00830.1.am.mkhc:exon:4
Zjn_sc00017.1 maker exon 330046 330235 . - . ID=Zjn_sc00017.1.g00830.1.am.mkhc:exon:3
Zjn_sc00017.1 maker exon 330633 330742 . - . ID=Zjn_sc00017.1.g00830.1.am.mkhc:exon:2
Zjn_sc00017.1 maker exon 330824 331031 . - . ID=Zjn_sc00017.1.g00830.1.am.mkhc:exon:1

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