Z. japonica Nagirizaki
Zjn_sc00017.1.g00430.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G61380.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 207 55 190 3e-56 298.6 48.3 56
Subject 618 9 144
Annot | Symbols: TOC1, APRR1, PRR1, AtTOC1 | CCT motif -containing response regulator protein | chr5:24675540-24678176 FORWARD LENGTH=618
NR gb|ADX60159.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 207 37 190 4e-77 248.8 67.6 69.1
Subject 515 1 149
Annot pseudoARR-B transcription factor [Zea mays] gi|413923083|gb|AFW63015.1| two-component response regulator-like PRR1 [Zea mays]
IRGSP Os02t0618200-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 207 37 190 2e-73 250.2 67.1 68.6
Subject 518 1 153
Annot
Sbicolor Sobic.004G216700.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 207 57 190 4e-75 253.1 62.3 63.8
Subject 524 26 159
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00017.1.g00430.1.am.mkhc length: 207 aa.
IPR001789 Signal transduction response regulator, receiver domain
method AccNumber shortName E-value location
Molecular Function GO:0000156 phosphorelay response regulator activity    
Biological Process GO:0000160 phosphorelay signal transduction system    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF00072 Response_reg 6.6e-16 67-178
HMMSmart SM00448 cheY-homologous 3.9e-11 65-180
ProfileScan PS50110 RESPONSE_REGULATORY 22.368 66-184
IPR011006 CheY-like superfamily
superfamily SSF52172 CheY-like 2.8e-24 62-191
no_ID  
Gene3D G3DSA:3.40.50.2300 no description 2.9e-25 64-191
HMMPanther PTHR26402 RESPONSE 1.2e-24 57-191
HMMPanther PTHR26402:SF256TWO-COMPONENT RESPONSE 1.2e-24 57-191
Seg seg seg NA 2-13
38-56
Pseudomolecule
Chromosome Start End Strand
81579086715793611+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00017.1 maker exon 168492 169564 . - . ID=Zjn_sc00017.1.g00430.1.am.mkhc:exon:6
Zjn_sc00017.1 maker exon 169710 169791 . - . ID=Zjn_sc00017.1.g00430.1.am.mkhc:exon:5
Zjn_sc00017.1 maker exon 170013 170437 . - . ID=Zjn_sc00017.1.g00430.1.am.mkhc:exon:4
Zjn_sc00017.1 maker exon 170524 170685 . - . ID=Zjn_sc00017.1.g00430.1.am.mkhc:exon:3
Zjn_sc00017.1 maker exon 170883 171049 . - . ID=Zjn_sc00017.1.g00430.1.am.mkhc:exon:2
Zjn_sc00017.1 maker exon 171133 171236 . - . ID=Zjn_sc00017.1.g00430.1.am.mkhc:exon:1

Top