Z. japonica Nagirizaki
Zjn_sc00017.1.g00270.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G20420.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 399 4 397 0.0 105.5 82 91.5
Subject 421 3 419
Annot | Symbols: | ATP citrate lyase (ACL) family protein | chr2:8805574-8807858 FORWARD LENGTH=421
NR ref|XP_002452471.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 399 1 399 0.0 105.8 95.5 97.7
Subject 422 1 422
Annot hypothetical protein SORBIDRAFT_04g026360 [Sorghum bicolor] gi|241932302|gb|EES05447.1| hypothetical protein SORBIDRAFT_04g026360 [Sorghum bicolor]
IRGSP Os02t0621700-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 399 1 399 0.0 105.8 92.5 96.2
Subject 422 1 422
Annot
Sbicolor Sobic.004G218600.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 399 1 399 0.0 105.8 95.5 97.7
Subject 422 1 422
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00017.1.g00270.1.sm.mkhc length: 399 aa.
IPR005809 Succinyl-CoA synthetase, beta subunit
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPanther PTHR11815 SUCCINYL-COA 2.3e-202 12-396
IPR005811 ATP-citrate lyase/succinyl-CoA ligase
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPfam PF00549 Ligase_CoA 1.6e-08 297-353
IPR011761 ATP-grasp fold
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0046872 metal ion binding    
ProfileScan PS50975 ATP_GRASP 9.247 36-262
IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type
HMMPfam PF08442 ATP-grasp_2 1e-60 29-238
IPR013815 ATP-grasp fold, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0005524 ATP binding    
Gene3D G3DSA:3.30.1490.20 no description 4.1e-22 48-129
IPR013816 ATP-grasp fold, subdomain 2
Molecular Function GO:0005524 ATP binding    
Gene3D G3DSA:3.30.470.20 no description 1.6e-54 130-274
IPR016102 Succinyl-CoA synthetase-like
Gene3D G3DSA:3.40.50.261 no description 2.4e-11 275-350
352-395
superfamily SSF52210 Succinyl-CoA 6.9e-40 274-398
IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site
PatternScan PS01217 SUCCINYL_COA_LIG_3 NA 292-316
no_ID  
HMMPanther PTHR11815:SF0 SUBFAMILY 2.3e-202 12-396
superfamily SSF56059 Glutathione 1.9e-69 27-273
Pseudomolecule
Chromosome Start End Strand
81585079515855979+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00017.1 maker exon 106124 106472 . - . ID=Zjn_sc00017.1.g00270.1.sm.mkhc:exon:12
Zjn_sc00017.1 maker exon 106594 106665 . - . ID=Zjn_sc00017.1.g00270.1.sm.mkhc:exon:11
Zjn_sc00017.1 maker exon 108074 108127 . - . ID=Zjn_sc00017.1.g00270.1.sm.mkhc:exon:10
Zjn_sc00017.1 maker exon 108326 108490 . - . ID=Zjn_sc00017.1.g00270.1.sm.mkhc:exon:9
Zjn_sc00017.1 maker exon 108672 108806 . - . ID=Zjn_sc00017.1.g00270.1.sm.mkhc:exon:8
Zjn_sc00017.1 maker exon 108876 109028 . - . ID=Zjn_sc00017.1.g00270.1.sm.mkhc:exon:7
Zjn_sc00017.1 maker exon 109133 109207 . - . ID=Zjn_sc00017.1.g00270.1.sm.mkhc:exon:6
Zjn_sc00017.1 maker exon 109754 109831 . - . ID=Zjn_sc00017.1.g00270.1.sm.mkhc:exon:5
Zjn_sc00017.1 maker exon 110151 110215 . - . ID=Zjn_sc00017.1.g00270.1.sm.mkhc:exon:4
Zjn_sc00017.1 maker exon 110331 110442 . - . ID=Zjn_sc00017.1.g00270.1.sm.mkhc:exon:3
Zjn_sc00017.1 maker exon 110903 111013 . - . ID=Zjn_sc00017.1.g00270.1.sm.mkhc:exon:2
Zjn_sc00017.1 maker exon 111132 111308 . - . ID=Zjn_sc00017.1.g00270.1.sm.mkhc:exon:1

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