Z. japonica Nagirizaki
Zjn_sc00016.1.g05080.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G47190.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 355 38 227 1e-65 76.9 32.1 41.1
Subject 273 15 204
Annot | Symbols: ATMYB2, MYB2 | myb domain protein 2 | chr2:19376284-19377297 FORWARD LENGTH=273
NR ref|XP_012700181.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 355 38 351 e-101 101.1 60.3 67
Subject 359 35 357
Annot PREDICTED: transcriptional activator Myb [Setaria italica]
IRGSP Os03t0315400-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 355 37 175 3e-74 92.7 34.9 38.6
Subject 329 11 152
Annot
Sbicolor Sobic.009G031900.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 355 30 351 2e-83 114.4 53.8 60.8
Subject 406 55 404
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00016.1.g05080.1.sm.mkhc length: 355 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 1.4e-14 45-92
98-141
HMMSmart SM00717 SANT 1.6e-15 44-94
97-145
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 5.5e-23 46-99
100-146
superfamily SSF46689 Homeodomain-like 5.2e-26 45-144
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 17.677 93-147
40-92
no_ID  
HMMPanther PTHR10641 MYB-LIKE 1.7e-85 1-178
HMMPanther PTHR10641:SF199SUBFAMILY NOT 1.7e-85 1-178
Seg seg seg NA 21-37
177-198
265-283
Pseudomolecule
Chromosome Start End Strand
18784669786314-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00016.1 maker exon 3067141 3067500 . + . ID=Zjn_sc00016.1.g05080.1.sm.mkhc:exon:1
Zjn_sc00016.1 maker exon 3067747 3068786 . + . ID=Zjn_sc00016.1.g05080.1.sm.mkhc:exon:2

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