Z. japonica Nagirizaki
Zjn_sc00016.1.g03420.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G32410.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 904 1 704 0.0 119.6 61.1 68.9
Subject 1081 1 709
Annot | Symbols: CESA1, RSW1, AtCESA1 | cellulose synthase 1 | chr4:15641009-15646388 REVERSE LENGTH=1081
NR gb|AFW81388.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 904 1 704 0.0 118.9 74.2 76.2
Subject 1075 1 703
Annot cellulose synthase1 [Zea mays]
IRGSP Os05t0176100-05_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 904 1 704 0.0 119 73.5 75.6
Subject 1076 1 704
Annot
Sbicolor Sobic.003G049600.2.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 904 1 704 0.0 118.8 69.9 73.8
Subject 1074 1 702
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00016.1.g03420.1.sm.mkhc length: 904 aa.
IPR005150 Cellulose synthase
method AccNumber shortName E-value location
Cellular Component GO:0016020 membrane    
Molecular Function GO:0016760 cellulose synthase (UDP-forming) activity    
Biological Process GO:0030244 cellulose biosynthetic process    
HMMPfam PF03552 Cellulose_synt 6.4e-98 351-705
709-894
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 2.1e-34 29-115
IPR027934 Cellulose synthase, RING-type zinc finger
HMMPfam PF14569 zf-UDP 5.5e-47 31-109
no_ID  
Coil coil coiled-coil NA 449-470
HMMPanther PTHR13301 X-BOX 0 16-904
HMMPanther PTHR13301:SF21 CELLULOSE 0 16-904
Seg seg seg NA 102-114
174-188
268-282
691-703
superfamily SSF53448 Nucleotide-diphospho-sugar 6.2e-06 354-638
superfamily SSF57850 RING/U-box 8.5e-42 23-118
Pseudomolecule
Chromosome Start End Strand
1816697741676361-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00016.1 maker exon 2177094 2177305 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:1
Zjn_sc00016.1 maker exon 2177919 2178114 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:2
Zjn_sc00016.1 maker exon 2178320 2178507 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:3
Zjn_sc00016.1 maker exon 2178682 2178766 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:4
Zjn_sc00016.1 maker exon 2178857 2179046 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:5
Zjn_sc00016.1 maker exon 2179434 2179700 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:6
Zjn_sc00016.1 maker exon 2179799 2180144 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:7
Zjn_sc00016.1 maker exon 2180224 2180361 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:8
Zjn_sc00016.1 maker exon 2180446 2180571 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:9
Zjn_sc00016.1 maker exon 2180654 2180866 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:10
Zjn_sc00016.1 maker exon 2180942 2181200 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:11
Zjn_sc00016.1 maker exon 2181314 2181329 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:12
Zjn_sc00016.1 maker exon 2181640 2181655 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:13
Zjn_sc00016.1 maker exon 2182336 2183681 . + . ID=Zjn_sc00016.1.g03420.1.sm.mkhc:exon:14

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