Z. japonica Nagirizaki
Zjn_sc00016.1.g02970.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G16500.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 407 71 226 2e-43 66.1 21.4 29
Subject 269 103 264
Annot | Symbols: PAP1, IAA26 | phytochrome-associated protein 1 | chr3:5612801-5614208 REVERSE LENGTH=269
NR ref|XP_004960888.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 407 2 220 3e-68 56.8 38.6 43.2
Subject 231 1 219
Annot PREDICTED: auxin-responsive protein IAA16-like [Setaria italica]
IRGSP Os02t0228900-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 407 56 221 9e-42 73.7 22.1 29.7
Subject 300 123 290
Annot
Sbicolor Sobic.009G069700.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 407 2 220 5e-59 59.5 35.1 40.3
Subject 242 1 232
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00016.1.g02970.1.am.mk length: 407 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 3.1e-43 61-214
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 32.146 121-213
no_ID  
HMMPanther PTHR31211 FAMILY 1.3e-65 41-231
HMMPanther PTHR31211:SF0 SUBFAMILY 1.3e-65 41-231
Seg seg seg NA 46-64
94-120
231-253
318-331
339-354
superfamily SSF54277 CAD 4e-16 108-209
Pseudomolecule
Chromosome Start End Strand
1819041501907155+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00016.1 maker_non_over exon 1946300 1946647 . - . ID=Zjn_sc00016.1.g02970.1.am.mk:exon:9
Zjn_sc00016.1 maker_non_over exon 1946744 1946821 . - . ID=Zjn_sc00016.1.g02970.1.am.mk:exon:8
Zjn_sc00016.1 maker_non_over exon 1947156 1947201 . - . ID=Zjn_sc00016.1.g02970.1.am.mk:exon:7
Zjn_sc00016.1 maker_non_over exon 1948073 1948163 . - . ID=Zjn_sc00016.1.g02970.1.am.mk:exon:6
Zjn_sc00016.1 maker_non_over exon 1948266 1948333 . - . ID=Zjn_sc00016.1.g02970.1.am.mk:exon:5
Zjn_sc00016.1 maker_non_over exon 1948433 1948544 . - . ID=Zjn_sc00016.1.g02970.1.am.mk:exon:4
Zjn_sc00016.1 maker_non_over exon 1948652 1948938 . - . ID=Zjn_sc00016.1.g02970.1.am.mk:exon:3
Zjn_sc00016.1 maker_non_over exon 1949017 1949101 . - . ID=Zjn_sc00016.1.g02970.1.am.mk:exon:2
Zjn_sc00016.1 maker_non_over exon 1949197 1949305 . - . ID=Zjn_sc00016.1.g02970.1.am.mk:exon:1

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