Z. japonica Nagirizaki
Zjn_sc00016.1.g02480.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT4G18960.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
166 |
8 |
91 |
4e-21 |
151.8 |
27.1 |
39.2 |
| Subject |
252 |
77 |
160 |
|
| Annot |
| Symbols: AG | K-box region and MADS-box transcription factor family protein | chr4:10383917-10388272 FORWARD LENGTH=252 |
| NR |
ref|XP_004960599.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
166 |
8 |
158 |
1e-44 |
173.5 |
63.9 |
72.9 |
| Subject |
288 |
116 |
288 |
|
| Annot |
PREDICTED: MADS-box transcription factor 58-like [Setaria italica] |
| IRGSP |
Os05t0203800-01_chr05_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
166 |
8 |
110 |
6e-30 |
140.4 |
41 |
50 |
| Subject |
233 |
103 |
233 |
|
| Annot |
|
| Sbicolor |
Sobic.009G075500.3.p|Chr09|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
166 |
8 |
158 |
1e-48 |
172.3 |
64.5 |
74.7 |
| Subject |
286 |
115 |
286 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00016.1.g02480.1.sm.mkhc |
length: 166 aa. |
| IPR002487 |
Transcription factor, K-box |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
|
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF01486 |
K-box |
2.7e-15 |
24-91 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
34-55 |
| HMMPanther |
PTHR11945 |
MADS |
1.5e-12 |
8-89 |
| HMMPanther |
PTHR11945:SF19 |
MADS |
1.5e-12 |
8-89 |
| Seg |
seg |
seg |
NA |
131-147 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 18 | 2159256 | 2163256 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00016.1 |
maker |
exon |
1690199 |
1690221 |
. |
+ |
. |
ID=Zjn_sc00016.1.g02480.1.sm.mkhc:exon:1 |
| Zjn_sc00016.1 |
maker |
exon |
1691321 |
1691402 |
. |
+ |
. |
ID=Zjn_sc00016.1.g02480.1.sm.mkhc:exon:2 |
| Zjn_sc00016.1 |
maker |
exon |
1692837 |
1692898 |
. |
+ |
. |
ID=Zjn_sc00016.1.g02480.1.sm.mkhc:exon:3 |
| Zjn_sc00016.1 |
maker |
exon |
1693018 |
1693117 |
. |
+ |
. |
ID=Zjn_sc00016.1.g02480.1.sm.mkhc:exon:4 |
| Zjn_sc00016.1 |
maker |
exon |
1693489 |
1693687 |
. |
+ |
. |
ID=Zjn_sc00016.1.g02480.1.sm.mkhc:exon:5 |
| Zjn_sc00016.1 |
maker |
exon |
1694050 |
1694199 |
. |
+ |
. |
ID=Zjn_sc00016.1.g02480.1.sm.mkhc:exon:6 |