Z. japonica Nagirizaki
Zjn_sc00016.1.g02470.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G42830.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 116 45 116 5e-27 212.1 45.7 55.2
Subject 246 3 75
Annot | Symbols: SHP2, AGL5 | K-box region and MADS-box transcription factor family protein | chr2:17820602-17823806 FORWARD LENGTH=246
NR ref|XP_004960599.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 116 1 116 1e-34 248.3 69.8 80.2
Subject 288 1 115
Annot PREDICTED: MADS-box transcription factor 58-like [Setaria italica]
IRGSP Os05t0203800-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 116 1 116 2e-31 200.9 60.3 69
Subject 233 1 102
Annot
Sbicolor Sobic.009G075500.2.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 116 1 116 2e-36 247.4 69.8 78.4
Subject 287 1 115
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00016.1.g02470.1.sm.mkhc length: 116 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 4.4e-30 59-79
79-94
94-115
HMMPfam PF00319 SRF-TF 9.9e-28 65-115
HMMSmart SM00432 no description 1.6e-33 60-116
PatternScan PS00350 MADS_BOX_1 NA 59-113
ProfileScan PS50066 MADS_BOX_2 29.352 61-116
superfamily SSF55455 SRF-like 1.4e-24 58-116
no_ID  
HMMPanther PTHR11945 MADS 3.7e-42 49-116
HMMPanther PTHR11945:SF19 MADS 3.7e-42 49-116
Seg seg seg NA 34-63
Pseudomolecule
Chromosome Start End Strand
1821651952166075-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00016.1 maker exon 1687380 1687560 . + . ID=Zjn_sc00016.1.g02470.1.sm.mkhc:exon:1
Zjn_sc00016.1 maker exon 1687958 1688260 . + . ID=Zjn_sc00016.1.g02470.1.sm.mkhc:exon:2

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