Z. japonica Nagirizaki
Zjn_sc00016.1.g02110.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G53300.4 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
148 |
1 |
148 |
3e-80 |
100 |
91.9 |
98 |
| Subject |
148 |
1 |
148 |
|
| Annot |
| Symbols: UBC10 | ubiquitin-conjugating enzyme 10 | chr5:21632802-21633989 REVERSE LENGTH=148 |
| NR |
ref|XP_004960630.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
148 |
1 |
148 |
2e-79 |
100 |
96.6 |
99.3 |
| Subject |
148 |
1 |
148 |
|
| Annot |
PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Setaria italica] |
| IRGSP |
Os04t0667800-01_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
148 |
1 |
148 |
1e-80 |
100 |
93.2 |
98 |
| Subject |
148 |
1 |
148 |
|
| Annot |
|
| Sbicolor |
Sobic.006G257900.1.p|Chr06|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
148 |
1 |
148 |
1e-80 |
100 |
93.2 |
98 |
| Subject |
148 |
1 |
148 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00016.1.g02110.1.am.mkhc |
length: 148 aa. |
| IPR000608 |
Ubiquitin-conjugating enzyme, E2 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016881 |
acid-amino acid ligase activity |
|
|
| HMMPfam |
PF00179 |
UQ_con |
7.8e-52 |
5-141 |
| ProfileScan |
PS50127 |
UBIQUITIN_CONJUGAT_2 |
47.711 |
4-136 |
| IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
| Gene3D |
G3DSA:3.10.110.10 |
no description |
3.6e-79 |
2-147 |
| superfamily |
SSF54495 |
UBC-like |
1.3e-63 |
1-148 |
| IPR023313 |
Ubiquitin-conjugating enzyme, active site |
| PatternScan |
PS00183 |
UBIQUITIN_CONJUGAT_1 |
NA |
74-89 |
| no_ID |
|
| HMMPanther |
PTHR24068 |
FAMILY |
5.5e-112 |
1-147 |
| HMMSmart |
SM00212 |
Ubiquitin-conjugating |
1.9e-76 |
4-147 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 18 | 2361204 | 2366279 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00016.1 |
maker |
exon |
1487176 |
1488030 |
. |
- |
. |
ID=Zjn_sc00016.1.g02110.1.am.mkhc:exon:5 |
| Zjn_sc00016.1 |
maker |
exon |
1489161 |
1489265 |
. |
- |
. |
ID=Zjn_sc00016.1.g02110.1.am.mkhc:exon:4 |
| Zjn_sc00016.1 |
maker |
exon |
1490741 |
1490868 |
. |
- |
. |
ID=Zjn_sc00016.1.g02110.1.am.mkhc:exon:3 |
| Zjn_sc00016.1 |
maker |
exon |
1491888 |
1491977 |
. |
- |
. |
ID=Zjn_sc00016.1.g02110.1.am.mkhc:exon:2 |
| Zjn_sc00016.1 |
maker |
exon |
1492114 |
1492251 |
. |
- |
. |
ID=Zjn_sc00016.1.g02110.1.am.mkhc:exon:1 |