Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00016.1.g01780.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00016.1)

BLAST

TAIR10	AT4G29080.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	244	6	244	2e-62	125	59.8	73.8
		Subject	305	8	305
		Annot	\| Symbols: PAP2, IAA27 \| phytochrome-associated protein 2 \| chr4:14323665-14325213 REVERSE LENGTH=305
NR	ref\|NP_001130483.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	244	1	244	e-112	100	88.1	91.8
		Subject	244	1	244
		Annot	IAA17-auxin-responsive Aux/IAA family member [Zea mays] gi\|194689256\|gb\|ACF78712.1\| unknown [Zea mays] gi\|194702428\|gb\|ACF85298.1\| unknown [Zea mays] gi\|194703038\|gb\|ACF85603.1\| unknown [Zea mays] gi\|195635865\|gb\|ACG37401.1\| IAA17 - auxin-responsive Aux/IAA family member [Zea mays] gi\|413944830\|gb\|AFW77479.1\| IAA17-auxin-responsive Aux/IAA family member [Zea mays]
IRGSP	Os05t0230700-02_chr05_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	244	1	244	4e-96	105.3	78.7	83.2
		Subject	257	1	257
		Annot
Sbicolor	Sobic.009G085100.1.p\|Chr09\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	244	1	244	2e-84	87.7	76.2	79.5
		Subject	214	1	214
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR003311	AUX/IAA protein
Zjn_sc00016.1.g01780.1.sm.mkhc				length: 244 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
HMMPfam	PF02309	AUX_IAA	1.3e-73	26-236
IPR011525	Aux/IAA-ARF-dimerisation
Molecular Function	GO:0046983	protein dimerization activity
ProfileScan	PS50962	IAA_ARF	33.301	139-227
no_ID
HMMPanther	PTHR31734	FAMILY	5.3e-106	1-244
Seg	seg	seg	NA	11-27 66-88
superfamily	SSF54277	CAD	3e-23	126-225

Pseudomolecule

Chromosome	Start	End	Strand
18	2577049	2580430	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00016.1	maker	exon	1273025	1273452	.	-	.	ID=Zjn_sc00016.1.g01780.1.sm.mkhc:exon:5
Zjn_sc00016.1	maker	exon	1274241	1274302	.	-	.	ID=Zjn_sc00016.1.g01780.1.sm.mkhc:exon:4
Zjn_sc00016.1	maker	exon	1274437	1274536	.	-	.	ID=Zjn_sc00016.1.g01780.1.sm.mkhc:exon:3
Zjn_sc00016.1	maker	exon	1275094	1275326	.	-	.	ID=Zjn_sc00016.1.g01780.1.sm.mkhc:exon:2
Zjn_sc00016.1	maker	exon	1276019	1276406	.	-	.	ID=Zjn_sc00016.1.g01780.1.sm.mkhc:exon:1