Z. japonica Nagirizaki
Zjn_sc00016.1.g01690.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G44635.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 581 1 380 e-145 143 41.8 51.6
Subject 831 1 378
Annot | Symbols: MCM6 | minichromosome maintenance (MCM2/3/5) family protein | chr5:18006431-18010542 REVERSE LENGTH=831
NR ref|XP_004960666.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 581 1 333 0.0 143 54 56.1
Subject 831 1 333
Annot PREDICTED: DNA replication licensing factor MCM6 [Setaria italica]
IRGSP Os05t0235800-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 581 1 333 0.0 142.9 54.2 55.8
Subject 830 1 333
Annot
Sbicolor Sobic.009G087000.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 581 1 333 0.0 143 53.9 55.6
Subject 831 1 333
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00016.1.g01690.1.sm.mk length: 581 aa.
IPR001208 Mini-chromosome maintenance, DNA-dependent ATPase
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
FPrintScan PR01657 MCMFAMILY 1.7e-20 108-123
335-349
363-376
387-399
HMMPfam PF00493 MCM 1e-39 326-414
HMMSmart SM00350 minichromosome 3.1e-52 120-455
ProfileScan PS50051 MCM_2 36.759 334-418
IPR008049 DNA replication licensing factor Mcm6
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003678 DNA helicase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006270 DNA replication initiation    
Cellular Component GO:0042555 MCM complex    
FPrintScan PR01662 MCMPROTEIN6 4.7e-24 74-86
121-133
171-188
224-235
283-304
HMMPanther PTHR11630:SF43 DNA 5.9e-177 10-553
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 1.7e-21 202-253
superfamily SSF50249 Nucleic 5e-59 18-254
IPR018525 Mini-chromosome maintenance, conserved site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
PatternScan PS00847 MCM_1 NA 343-351
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.6e-14 324-470
IPR027925 MCM N-terminal domain
HMMPfam PF14551 MCM_N 3.8e-19 18-140
no_ID  
Gene3D G3DSA:3.30.1640.10 no description 6.7e-05 14-119
Gene3D G3DSA:3.40.50.300 no description 2.3e-21 315-398
HMMPanther PTHR11630 DNA 5.9e-177 10-553
Seg seg seg NA 316-326
Pseudomolecule
Chromosome Start End Strand
1826463932653082+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00016.1 maker_non_over exon 1200373 1200401 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:16
Zjn_sc00016.1 maker_non_over exon 1200893 1200962 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:15
Zjn_sc00016.1 maker_non_over exon 1201127 1201257 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:14
Zjn_sc00016.1 maker_non_over exon 1202116 1202139 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:13
Zjn_sc00016.1 maker_non_over exon 1202235 1202359 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:12
Zjn_sc00016.1 maker_non_over exon 1202437 1202492 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:11
Zjn_sc00016.1 maker_non_over exon 1202927 1203022 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:10
Zjn_sc00016.1 maker_non_over exon 1203423 1203563 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:9
Zjn_sc00016.1 maker_non_over exon 1203644 1203718 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:8
Zjn_sc00016.1 maker_non_over exon 1204950 1205027 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:7
Zjn_sc00016.1 maker_non_over exon 1205120 1205315 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:6
Zjn_sc00016.1 maker_non_over exon 1205404 1205597 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:5
Zjn_sc00016.1 maker_non_over exon 1205678 1205840 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:4
Zjn_sc00016.1 maker_non_over exon 1206142 1206282 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:3
Zjn_sc00016.1 maker_non_over exon 1206713 1206862 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:2
Zjn_sc00016.1 maker_non_over exon 1206986 1207062 . - . ID=Zjn_sc00016.1.g01690.1.sm.mk:exon:1

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