Z. japonica Nagirizaki
Zjn_sc00015.1.g08200.1.sm.mk ( /TE )
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23230.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 116 10 112 1e-29 119.8 54.3 71.6
Subject 139 18 136
Annot | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:8289647-8290066 REVERSE LENGTH=139
NR gb|EMT06920.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 116 4 115 2e-40 157.8 74.1 79.3
Subject 183 76 181
Annot Ethylene-responsive transcription factor ERF098 [Aegilops tauschii]
IRGSP Os09t0571700-00_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 116 5 115 3e-32 112.9 59.5 70.7
Subject 131 11 131
Annot
Sbicolor Sobic.002G139300.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 116 3 114 4e-34 111.2 67.2 75.9
Subject 129 2 120
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00015.1.g08200.1.sm.mk length: 116 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 2.4e-10 12-23
35-51
Gene3D G3DSA:3.30.730.10 no description 9.3e-30 11-69
HMMPfam PF00847 AP2 1.3e-18 10-62
HMMSmart SM00380 DNA-binding 4.9e-32 11-75
ProfileScan PS51032 AP2_ERF 22.972 11-69
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 6.5e-24 10-72
no_ID  
HMMPanther PTHR31190 FAMILY 1e-20 7-91
HMMPanther PTHR31190:SF0 SUBFAMILY 1e-20 7-91
Seg seg seg NA 45-58
79-92
Pseudomolecule
Chromosome Start End Strand
1487677318768081+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00015.1 maker_non_over exon 4232681 4233031 . + . ID=Zjn_sc00015.1.g08200.1.sm.mk:exon:1

Top