Z. japonica Nagirizaki
Zjn_sc00015.1.g08080.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G28190.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 222 37 222 2e-67 97.3 61.7 70.3
Subject 216 1 216
Annot | Symbols: CSD2, CZSOD2 | copper/zinc superoxide dismutase 2 | chr2:12014548-12016303 FORWARD LENGTH=216
NR gb|AIN39808.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 222 1 222 e-101 112.2 99.1 99.5
Subject 249 10 249
Annot hypothetical protein [Zoysia matrella]
IRGSP Os08t0561700-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 222 41 222 2e-77 95 73.9 77.5
Subject 211 13 211
Annot
Sbicolor Sobic.007G166600.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 222 57 222 7e-73 92.8 68.9 71.2
Subject 206 23 206
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00015.1.g08080.1.sm.mkhc length: 222 aa.
IPR001424 Superoxide dismutase, copper/zinc binding domain
method AccNumber shortName E-value location
Biological Process GO:0006801 superoxide metabolic process    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00068 CUZNDISMTASE 1.2e-31 130-152
166-175
185-207
210-222
Gene3D G3DSA:2.60.40.200 no description 2.4e-49 89-214
HMMPfam PF00080 Sod_Cu 1.5e-41 91-213
superfamily SSF49329 Cu,Zn 1.7e-45 87-222
IPR018152 Superoxide dismutase, copper/zinc, binding site
Molecular Function GO:0004784 superoxide dismutase activity    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00087 SOD_CU_ZN_1 NA 130-140
IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone
HMMPanther PTHR10003 SUPEROXIDE 4.9e-68 90-215
no_ID  
Seg seg seg NA 26-61
67-96
Pseudomolecule
Chromosome Start End Strand
1487309458733068+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00015.1 maker exon 4195895 4196231 . + . ID=Zjn_sc00015.1.g08080.1.sm.mkhc:exon:1
Zjn_sc00015.1 maker exon 4196440 4196501 . + . ID=Zjn_sc00015.1.g08080.1.sm.mkhc:exon:2
Zjn_sc00015.1 maker exon 4196589 4196628 . + . ID=Zjn_sc00015.1.g08080.1.sm.mkhc:exon:3
Zjn_sc00015.1 maker exon 4196821 4196916 . + . ID=Zjn_sc00015.1.g08080.1.sm.mkhc:exon:4
Zjn_sc00015.1 maker exon 4197038 4197069 . + . ID=Zjn_sc00015.1.g08080.1.sm.mkhc:exon:5
Zjn_sc00015.1 maker exon 4197183 4197258 . + . ID=Zjn_sc00015.1.g08080.1.sm.mkhc:exon:6
Zjn_sc00015.1 maker exon 4197725 4198018 . + . ID=Zjn_sc00015.1.g08080.1.sm.mkhc:exon:7

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