Z. japonica Nagirizaki
Zjn_sc00015.1.g07690.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G02080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 556 37 532 e-102 92.8 41.4 50.5
Subject 516 46 483
Annot | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain 4 | chr2:518328-521170 REVERSE LENGTH=516
NR gb|AAV51393.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 556 3 556 0.0 97.8 80.4 85.4
Subject 544 2 544
Annot INDETERMINATE-related protein 1 [Zea mays]
IRGSP Os08t0554400-02_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 556 3 556 e-167 98.6 69.6 75
Subject 548 2 548
Annot
Sbicolor Sobic.007G173200.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 556 1 556 0.0 99.5 79.1 83.3
Subject 553 1 553
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00015.1.g07690.1.sm.mk length: 556 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 91-111
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.094 89-111
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.00035 88-111
153-186
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 1.1e+02 89-111
130-160
165-185
IPR022755 Zinc finger, double-stranded RNA binding
HMMPfam PF12171 zf-C2H2_jaz 6.9e-05 88-111
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 3.1e-175 42-457
HMMPanther PTHR10593:SF17 SUBFAMILY 3.1e-175 42-457
Seg seg seg NA 16-44
227-246
301-313
365-383
437-463
475-489
superfamily SSF57667 C2H2 0.00011 160-203
59-111
Pseudomolecule
Chromosome Start End Strand
1485650108568757-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00015.1 maker_non_over exon 4029960 4031025 . - . ID=Zjn_sc00015.1.g07690.1.sm.mk:exon:4
Zjn_sc00015.1 maker_non_over exon 4033036 4033432 . - . ID=Zjn_sc00015.1.g07690.1.sm.mk:exon:3
Zjn_sc00015.1 maker_non_over exon 4033464 4033504 . - . ID=Zjn_sc00015.1.g07690.1.sm.mk:exon:2
Zjn_sc00015.1 maker_non_over exon 4033541 4033707 . - . ID=Zjn_sc00015.1.g07690.1.sm.mk:exon:1

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