Z. japonica Nagirizaki
Zjn_sc00015.1.g05430.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G42200.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 540 171 540 1e-39 69.4 26.9 34.8
Subject 375 32 375
Annot | Symbols: SPL9, AtSPL9 | squamosa promoter binding protein-like 9 | chr2:17587601-17589451 FORWARD LENGTH=375
NR ref|XP_004974838.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 540 165 540 e-134 74.3 51.7 56.7
Subject 401 21 401
Annot PREDICTED: squamosa promoter-binding-like protein 14 isoform X1 [Setaria italica]
IRGSP Os08t0509600-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 540 167 540 e-110 77.2 44.8 50.4
Subject 417 32 417
Annot
Sbicolor Sobic.007G210200.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 540 165 540 e-131 75.7 50 55.4
Subject 409 16 409
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00015.1.g05430.1.am.mk length: 540 aa.
IPR004333 Transcription factor, SBP-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Gene3D G3DSA:4.10.1100.10 no description 2.6e-32 224-293
HMMPfam PF03110 SBP 8.2e-40 231-306
ProfileScan PS51141 ZF_SBP 31.915 229-306
superfamily SSF103612 SBT 6.1e-40 229-314
no_ID  
HMMPanther PTHR31251 FAMILY 3.1e-37 230-313
HMMPanther PTHR31251:SF0 SUBFAMILY 3.1e-37 230-313
Seg seg seg NA 101-118
151-164
182-227
404-414
Pseudomolecule
Chromosome Start End Strand
1476018767605830-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00015.1 maker_non_over exon 3066826 3067478 . - . ID=Zjn_sc00015.1.g05430.1.am.mk:exon:5
Zjn_sc00015.1 maker_non_over exon 3067574 3067710 . - . ID=Zjn_sc00015.1.g05430.1.am.mk:exon:4
Zjn_sc00015.1 maker_non_over exon 3069782 3070342 . - . ID=Zjn_sc00015.1.g05430.1.am.mk:exon:3
Zjn_sc00015.1 maker_non_over exon 3070433 3070625 . - . ID=Zjn_sc00015.1.g05430.1.am.mk:exon:2
Zjn_sc00015.1 maker_non_over exon 3070702 3070780 . - . ID=Zjn_sc00015.1.g05430.1.am.mk:exon:1

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