Z. japonica Nagirizaki
Zjn_sc00015.1.g05400.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G45140.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 874 22 760 0.0 102.5 44.7 58.5
Subject 896 117 834
Annot | Symbols: LOX2, ATLOX2 | lipoxygenase 2 | chr3:16525437-16529233 FORWARD LENGTH=896
NR ref|XP_004973870.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 874 18 707 0.0 111.3 67.4 71.6
Subject 973 158 865
Annot PREDICTED: probable lipoxygenase 8, chloroplastic [Setaria italica]
IRGSP Os08t0509100-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 874 18 707 0.0 107.7 61.7 68.6
Subject 941 144 833
Annot
Sbicolor Sobic.007G210400.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 874 18 707 0.0 93.4 65.1 69.5
Subject 816 5 708
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00015.1.g05400.1.sm.mkhc length: 874 aa.
IPR000907 Lipoxygenase
method AccNumber shortName E-value location
Molecular Function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
HMMPanther PTHR11771 LIPOXYGENASE 0 34-694
IPR001024 PLAT/LH2 domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.60.60.20 no description 3.4e-31 15-129
HMMPfam PF01477 PLAT 9.4e-05 40-114
HMMSmart SM00308 Lipoxygenase 1.3e-05 1-117
ProfileScan PS50095 PLAT 9.492 1-113
IPR001246 Lipoxygenase, plant
Molecular Function GO:0005506 iron ion binding    
Molecular Function GO:0016165 lipoxygenase activity    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00468 PLTLPOXGNASE 8.9e-61 112-133
151-167
184-203
249-270
297-313
336-355
404-428
IPR008976 Lipase/lipooxygenase, PLAT/LH2
superfamily SSF49723 Lipase/lipooxygenase 2.2e-18 17-120
IPR013819 Lipoxygenase, C-terminal
Molecular Function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00087 LIPOXYGENASE 2.9e-19 449-466
467-484
487-507
HMMPfam PF00305 Lipoxygenase 5.2e-249 127-697
ProfileScan PS51393 LIPOXYGENASE_3 244.787 119-696
superfamily SSF48484 Lipoxigenase 1.1e-221 121-693
IPR020833 Lipoxygenase, iron binding site
Molecular Function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00711 LIPOXYGENASE_1 NA 467-481
IPR020834 Lipoxygenase, conserved site
Molecular Function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00081 LIPOXYGENASE_2 NA 494-504
IPR027433 Lipoxygenase, domain 3
Gene3D G3DSA:4.10.372.10 no description 3.8e-22 238-328
no_ID  
Gene3D G3DSA:1.20.245.10 no description 7.8e-103 465-695
Gene3D G3DSA:3.10.450.60 no description 1.5e-50 330-463
Gene3D G3DSA:4.10.375.10 no description 6.4e-41 130-218
HMMPanther PTHR11771:SF2 LIPOXYGENASE 0 34-694
Pseudomolecule
Chromosome Start End Strand
1475927047598254+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00015.1 maker exon 3057654 3057705 . + . ID=Zjn_sc00015.1.g05400.1.sm.mkhc:exon:1
Zjn_sc00015.1 maker exon 3057903 3058204 . + . ID=Zjn_sc00015.1.g05400.1.sm.mkhc:exon:2
Zjn_sc00015.1 maker exon 3058725 3058965 . + . ID=Zjn_sc00015.1.g05400.1.sm.mkhc:exon:3
Zjn_sc00015.1 maker exon 3059051 3059374 . + . ID=Zjn_sc00015.1.g05400.1.sm.mkhc:exon:4
Zjn_sc00015.1 maker exon 3059514 3059599 . + . ID=Zjn_sc00015.1.g05400.1.sm.mkhc:exon:5
Zjn_sc00015.1 maker exon 3059696 3060795 . + . ID=Zjn_sc00015.1.g05400.1.sm.mkhc:exon:6
Zjn_sc00015.1 maker exon 3061509 3061979 . + . ID=Zjn_sc00015.1.g05400.1.sm.mkhc:exon:7
Zjn_sc00015.1 maker exon 3063156 3063204 . + . ID=Zjn_sc00015.1.g05400.1.sm.mkhc:exon:8

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