Z. japonica Nagirizaki
Zjn_sc00015.1.g04830.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G55740.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
754 |
1 |
753 |
0.0 |
100 |
72.1 |
82.8 |
| Subject |
754 |
1 |
754 |
|
| Annot |
| Symbols: AtSIP1, SIP1 | seed imbibition 1 | chr1:20835507-20838707 REVERSE LENGTH=754 |
| NR |
ref|XP_004973796.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
754 |
1 |
753 |
0.0 |
99.9 |
88.3 |
93.9 |
| Subject |
753 |
1 |
752 |
|
| Annot |
PREDICTED: probable galactinol--sucrose galactosyltransferase 1 [Setaria italica] |
| IRGSP |
Os08t0495800-02_chr08_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
754 |
1 |
753 |
0.0 |
99.9 |
83.4 |
90.1 |
| Subject |
753 |
1 |
752 |
|
| Annot |
|
| Sbicolor |
Sobic.007G219900.1.p|Chr07|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
754 |
1 |
752 |
0.0 |
100 |
88.9 |
93.8 |
| Subject |
754 |
1 |
752 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00015.1.g04830.1.sm.mkhc |
length: 754 aa. |
| IPR008811 |
Glycosyl hydrolases 36 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF05691 |
Raffinose_syn |
5.8e-298 |
7-737 |
| IPR013785 |
Aldolase-type TIM barrel |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Gene3D |
G3DSA:3.20.20.70 |
no description |
3.7e-65 |
360-532 |
| IPR017853 |
Glycoside hydrolase, superfamily |
| superfamily |
SSF51445 |
(Trans)glycosidases |
3.2e-62 |
191-544 |
| no_ID |
|
| HMMPanther |
PTHR31268 |
FAMILY |
0 |
2-754 |
| HMMPanther |
PTHR31268:SF0 |
SUBFAMILY |
0 |
2-754 |
| Seg |
seg |
seg |
NA |
317-328 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 14 | 7309412 | 7315970 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00015.1 |
maker |
exon |
2774362 |
2774552 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:1 |
| Zjn_sc00015.1 |
maker |
exon |
2774941 |
2775194 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:2 |
| Zjn_sc00015.1 |
maker |
exon |
2775302 |
2775392 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:3 |
| Zjn_sc00015.1 |
maker |
exon |
2775521 |
2775569 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:4 |
| Zjn_sc00015.1 |
maker |
exon |
2775653 |
2775744 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:5 |
| Zjn_sc00015.1 |
maker |
exon |
2775838 |
2775945 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:6 |
| Zjn_sc00015.1 |
maker |
exon |
2776067 |
2776201 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:7 |
| Zjn_sc00015.1 |
maker |
exon |
2776295 |
2776705 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:8 |
| Zjn_sc00015.1 |
maker |
exon |
2776796 |
2776937 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:9 |
| Zjn_sc00015.1 |
maker |
exon |
2777047 |
2777114 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:10 |
| Zjn_sc00015.1 |
maker |
exon |
2777212 |
2777346 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:11 |
| Zjn_sc00015.1 |
maker |
exon |
2777441 |
2777658 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:12 |
| Zjn_sc00015.1 |
maker |
exon |
2777788 |
2778151 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:13 |
| Zjn_sc00015.1 |
maker |
exon |
2780772 |
2780920 |
. |
+ |
. |
ID=Zjn_sc00015.1.g04830.1.sm.mkhc:exon:14 |