Z. japonica Nagirizaki
Zjn_sc00015.1.g04530.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G08130.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 475 227 324 2e-31 85.9 13.9 16
Subject 408 136 232
Annot | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:2606655-2608652 REVERSE LENGTH=408
NR ref|XP_004973763.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 475 1 453 e-138 104.2 64.8 70.9
Subject 495 1 415
Annot PREDICTED: transcription factor BIM1-like [Setaria italica]
IRGSP Os08t0490000-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 475 1 452 e-108 106.9 54.3 63.2
Subject 508 1 426
Annot
Sbicolor Sobic.007G223300.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 475 1 453 e-136 104.2 61.1 67.6
Subject 495 1 413
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00015.1.g04530.1.sm.mkhc length: 475 aa.
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:4.10.280.10 no description 3e-23 247-320
HMMPfam PF00010 HLH 4e-15 250-299
HMMSmart SM00353 helix 5.5e-13 254-304
ProfileScan PS50888 BHLH 16.888 248-298
superfamily SSF47459 HLH, 2e-19 246-331
no_ID  
Coil coil coiled-coil NA 295-316
HMMPanther PTHR12565 STEROL 2e-69 1-452
HMMPanther PTHR12565:SF7 BASIC 2e-69 1-452
Seg seg seg NA 117-129
130-134
149-163
Pseudomolecule
Chromosome Start End Strand
1471712937178007+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00015.1 maker exon 2636243 2636494 . + . ID=Zjn_sc00015.1.g04530.1.sm.mkhc:exon:1
Zjn_sc00015.1 maker exon 2636622 2636720 . + . ID=Zjn_sc00015.1.g04530.1.sm.mkhc:exon:2
Zjn_sc00015.1 maker exon 2637371 2637583 . + . ID=Zjn_sc00015.1.g04530.1.sm.mkhc:exon:3
Zjn_sc00015.1 maker exon 2640353 2640827 . + . ID=Zjn_sc00015.1.g04530.1.sm.mkhc:exon:4
Zjn_sc00015.1 maker exon 2641209 2641278 . + . ID=Zjn_sc00015.1.g04530.1.sm.mkhc:exon:5
Zjn_sc00015.1 maker exon 2641382 2641516 . + . ID=Zjn_sc00015.1.g04530.1.sm.mkhc:exon:6
Zjn_sc00015.1 maker exon 2641602 2641812 . + . ID=Zjn_sc00015.1.g04530.1.sm.mkhc:exon:7
Zjn_sc00015.1 maker exon 2641926 2642067 . + . ID=Zjn_sc00015.1.g04530.1.sm.mkhc:exon:8
Zjn_sc00015.1 maker exon 2642494 2642957 . + . ID=Zjn_sc00015.1.g04530.1.sm.mkhc:exon:9

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