Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00015.1.g04230.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00015.1)

BLAST

TAIR10	AT1G22410.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	476	44	464	0.0	110.7	74.6	80
		Subject	527	75	521
		Annot	\| Symbols: \| Class-II DAHP synthetase family protein \| chr1:7912120-7914742 FORWARD LENGTH=527
NR	ref\|XP_004973740.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	476	1	476	0.0	106.3	91.8	95
		Subject	506	1	502
		Annot	PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like [Setaria italica]
IRGSP	Os08t0484500-01_chr08_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	476	23	476	0.0	106.1	86.3	90.3
		Subject	505	21	501
		Annot
Sbicolor	Sobic.007G225700.1.p\|Chr07\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	476	42	475	0.0	106.7	84.2	87
		Subject	508	47	506
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR002480	DAHP synthetase, class II
Zjn_sc00015.1.g04230.1.sm.mkhc				length: 476 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003849	3-deoxy-7-phosphoheptulonate synthase activity
Biological Process	GO:0009073	aromatic amino acid family biosynthetic process
HMMPanther	PTHR21337	PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE	1.2e-258	18-474
HMMPfam	PF01474	DAHP_synth_2	1e-107	44-307
no_ID
HMMPanther	PTHR21337:SF0	SUBFAMILY	1.2e-258	18-474
Seg	seg	seg	NA	2-18 24-37 81-103
superfamily	SSF51569	Aldolase	3.8e-178	21-459

Pseudomolecule

Chromosome	Start	End	Strand
14	7045059	7048342	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00015.1	maker	exon	2510009	2510427	.	-	.	ID=Zjn_sc00015.1.g04230.1.sm.mkhc:exon:5
Zjn_sc00015.1	maker	exon	2510852	2511097	.	-	.	ID=Zjn_sc00015.1.g04230.1.sm.mkhc:exon:4
Zjn_sc00015.1	maker	exon	2511315	2511513	.	-	.	ID=Zjn_sc00015.1.g04230.1.sm.mkhc:exon:3
Zjn_sc00015.1	maker	exon	2511784	2512061	.	-	.	ID=Zjn_sc00015.1.g04230.1.sm.mkhc:exon:2
Zjn_sc00015.1	maker	exon	2512861	2513292	.	-	.	ID=Zjn_sc00015.1.g04230.1.sm.mkhc:exon:1