Z. japonica Nagirizaki
Zjn_sc00015.1.g03880.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G65420.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 355 54 332 7e-61 86.8 34.6 50.1
Subject 308 37 305
Annot | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141592-26143750 REVERSE LENGTH=308
NR ref|XP_004973707.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 355 1 354 e-132 101.7 77.7 83.7
Subject 361 1 359
Annot PREDICTED: cyclin-D4-2-like [Setaria italica]
IRGSP Os08t0479300-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 355 1 355 e-106 107.9 66.2 76.3
Subject 383 1 383
Annot
Sbicolor Sobic.007G160300.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 355 1 354 e-129 105.1 74.4 83.4
Subject 373 1 371
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00015.1.g03880.1.sm.mk length: 355 aa.
IPR004367 Cyclin, C-terminal domain
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
HMMPfam PF02984 Cyclin_C 2e-07 196-286
IPR006671 Cyclin, N-terminal
HMMPfam PF00134 Cyclin_N 3.9e-31 65-193
PatternScan PS00292 CYCLINS NA 94-125
IPR013763 Cyclin-like
Gene3D G3DSA:1.10.472.10 no description 9.5e-07 86-187
188-290
HMMSmart SM00385 domain 9.2e-16 99-187
superfamily SSF47954 Cyclin-like 7.4e-39 58-194
no_ID  
HMMPanther PTHR10177 CYCLINE 6.9e-102 59-355
HMMPanther PTHR10177:SF76 CYCLIN-D 6.9e-102 59-355
Seg seg seg NA 27-34
244-259
328-348
Pseudomolecule
Chromosome Start End Strand
1468941856896362+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00015.1 maker_non_over exon 2359135 2359443 . + . ID=Zjn_sc00015.1.g03880.1.sm.mk:exon:1
Zjn_sc00015.1 maker_non_over exon 2359999 2360085 . + . ID=Zjn_sc00015.1.g03880.1.sm.mk:exon:2
Zjn_sc00015.1 maker_non_over exon 2360213 2360311 . + . ID=Zjn_sc00015.1.g03880.1.sm.mk:exon:3
Zjn_sc00015.1 maker_non_over exon 2360413 2360614 . + . ID=Zjn_sc00015.1.g03880.1.sm.mk:exon:4
Zjn_sc00015.1 maker_non_over exon 2360711 2360826 . + . ID=Zjn_sc00015.1.g03880.1.sm.mk:exon:5
Zjn_sc00015.1 maker_non_over exon 2361058 2361312 . + . ID=Zjn_sc00015.1.g03880.1.sm.mk:exon:6

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