Z. japonica Nagirizaki
Zjn_sc00015.1.g03140.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G68130.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 636 34 184 4e-81 65.9 20.3 21.4
Subject 419 35 185
Annot | Symbols: AtIDD14, IDD14 | indeterminate(ID)-domain 14 | chr1:25532484-25534317 FORWARD LENGTH=419
NR ref|XP_002444487.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 636 1 184 2e-97 84.3 26.7 26.9
Subject 536 1 184
Annot hypothetical protein SORBIDRAFT_07g022700 [Sorghum bicolor] gi|241940837|gb|EES13982.1| hypothetical protein SORBIDRAFT_07g022700 [Sorghum bicolor]
IRGSP Os08t0467100-02_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 636 1 222 4e-91 83.8 27.4 29.2
Subject 533 1 205
Annot
Sbicolor Sobic.007G153300.1.p|Chr07|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 636 1 184 e-100 84.3 26.7 26.9
Subject 536 1 184
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00015.1.g03140.1.am.mk length: 636 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
HMMPfam PF00096 zf-C2H2 0.00075 69-91
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 71-91
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.635 69-91
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.00031 68-91
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 2.3e+02 69-91
111-141
147-174
no_ID  
Coil coil coiled-coil NA 514-563
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 4.1e-70 39-184
HMMPanther PTHR10593:SF17 SUBFAMILY 4.1e-70 39-184
Seg seg seg NA 31-48
215-220
249-261
335-394
500-554
superfamily SSF57667 C2H2 2.6e-07 67-168
Pseudomolecule
Chromosome Start End Strand
1465277016530121+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00015.1 maker_non_over exon 1992651 1992798 . + . ID=Zjn_sc00015.1.g03140.1.am.mk:exon:1
Zjn_sc00015.1 maker_non_over exon 1992953 1993355 . + . ID=Zjn_sc00015.1.g03140.1.am.mk:exon:2
Zjn_sc00015.1 maker_non_over exon 1993548 1993656 . + . ID=Zjn_sc00015.1.g03140.1.am.mk:exon:3
Zjn_sc00015.1 maker_non_over exon 1993730 1993858 . + . ID=Zjn_sc00015.1.g03140.1.am.mk:exon:4
Zjn_sc00015.1 maker_non_over exon 1993884 1994062 . + . ID=Zjn_sc00015.1.g03140.1.am.mk:exon:5
Zjn_sc00015.1 maker_non_over exon 1994129 1995071 . + . ID=Zjn_sc00015.1.g03140.1.am.mk:exon:6

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