Z. japonica Nagirizaki
Zjn_sc00015.1.g03120.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G17330.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
496 |
1 |
496 |
0.0 |
101.2 |
80 |
87.5 |
| Subject |
502 |
1 |
502 |
|
| Annot |
| Symbols: GAD, GAD1 | glutamate decarboxylase | chr5:5711141-5714839 FORWARD LENGTH=502 |
| NR |
gb|ABZ88153.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
496 |
1 |
496 |
0.0 |
100 |
87.5 |
93.8 |
| Subject |
496 |
1 |
496 |
|
| Annot |
glutamate decarboxylase [Zea mays] |
| IRGSP |
Os08t0465800-02_chr08_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
496 |
1 |
496 |
0.0 |
100.2 |
85.1 |
91.5 |
| Subject |
497 |
1 |
497 |
|
| Annot |
|
| Sbicolor |
Sobic.007G152800.1.p|Chr07|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
496 |
1 |
496 |
0.0 |
120.6 |
87.9 |
93.3 |
| Subject |
598 |
99 |
598 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00015.1.g03120.1.sm.mkhc |
length: 496 aa. |
| IPR002129 |
Pyridoxal phosphate-dependent decarboxylase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| Biological Process |
GO:0019752 |
carboxylic acid metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPfam |
PF00282 |
Pyridoxal_deC |
3.2e-104 |
35-381 |
| IPR010107 |
Glutamate decarboxylase |
| Molecular Function |
GO:0004351 |
glutamate decarboxylase activity |
|
|
| Biological Process |
GO:0006536 |
glutamate metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPanther |
PTHR11999:SF1 |
GLUTAMATE |
0 |
1-493 |
| HMMTigr |
TIGR01788 |
Glu-decarb-GAD: |
4.4e-212 |
16-444 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
1.1e-31 |
75-311 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
6.6e-137 |
3-444 |
| no_ID |
|
| HMMPanther |
PTHR11999 |
GROUP |
0 |
1-493 |
| Seg |
seg |
seg |
NA |
447-474 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 14 | 6505118 | 6508526 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00015.1 |
maker |
exon |
1970068 |
1970819 |
. |
- |
. |
ID=Zjn_sc00015.1.g03120.1.sm.mkhc:exon:7 |
| Zjn_sc00015.1 |
maker |
exon |
1970896 |
1970948 |
. |
- |
. |
ID=Zjn_sc00015.1.g03120.1.sm.mkhc:exon:6 |
| Zjn_sc00015.1 |
maker |
exon |
1971037 |
1971290 |
. |
- |
. |
ID=Zjn_sc00015.1.g03120.1.sm.mkhc:exon:5 |
| Zjn_sc00015.1 |
maker |
exon |
1971445 |
1971659 |
. |
- |
. |
ID=Zjn_sc00015.1.g03120.1.sm.mkhc:exon:4 |
| Zjn_sc00015.1 |
maker |
exon |
1971750 |
1971950 |
. |
- |
. |
ID=Zjn_sc00015.1.g03120.1.sm.mkhc:exon:3 |
| Zjn_sc00015.1 |
maker |
exon |
1973057 |
1973261 |
. |
- |
. |
ID=Zjn_sc00015.1.g03120.1.sm.mkhc:exon:2 |
| Zjn_sc00015.1 |
maker |
exon |
1973361 |
1973476 |
. |
- |
. |
ID=Zjn_sc00015.1.g03120.1.sm.mkhc:exon:1 |